RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 PXYLP1Q8TE99 480 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 CHURC1Q8WUH1 139 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 USP6NLQ92738 828 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 IVNS1ABPQ9Y6Y0 642 aa17.11■□□□□ 0.33
VRK3-206ENST00000594090 RBBP6Q7Z6E9 1792 aaKnown RBP17.1■□□□□ 0.33
VRK3-206ENST00000594090 SNHG28P0DPA3 235 aa17.1■□□□□ 0.33
VRK3-206ENST00000594090 ELNP15502 786 aa17.1■□□□□ 0.33
VRK3-206ENST00000594090 GRB14Q14449 540 aa17.1■□□□□ 0.33
VRK3-206ENST00000594090 NCAPG2Q86XI2 1143 aa17.1■□□□□ 0.33
VRK3-206ENST00000594090 PNMA1Q8ND90 353 aa17.1■□□□□ 0.33
VRK3-206ENST00000594090 MROH8Q9H579 483 aa17.1■□□□□ 0.33
VRK3-206ENST00000594090 KAT14Q9H8E8 782 aa17.1■□□□□ 0.33
VRK3-206ENST00000594090 SLC38A10Q9HBR0 1119 aa17.1■□□□□ 0.33
VRK3-206ENST00000594090 BRCA2P51587 3418 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 FRMPD2Q68DX3 1309 aaPredicted RBP17.09■□□□□ 0.33
VRK3-206ENST00000594090 SLC15A5A6NIM6 579 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 ZBED4O75132 1171 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 SLC25A27O95847 323 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 FDX1P10109 184 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 CYP2B6P20813 491 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 STAT3P40763 770 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 SOX10P56693 466 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 SEC23AQ15436 765 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 IFIT1BQ5T764 474 aaKnown RBP17.09■□□□□ 0.33
VRK3-206ENST00000594090 MB21D2Q8IYB1 491 aaPredicted RBP17.09■□□□□ 0.33
VRK3-206ENST00000594090 APBA2Q99767 749 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 TEX13BQ9BXU2 312 aa17.09■□□□□ 0.33
VRK3-206ENST00000594090 CTDP1Q9Y5B0 961 aaPredicted RBP17.09■□□□□ 0.33
VRK3-206ENST00000594090 ATP2A1O14983 1001 aa17.08■□□□□ 0.32
VRK3-206ENST00000594090 XRCC5P13010 732 aaKnown RBP17.08■□□□□ 0.32
VRK3-206ENST00000594090 COPB2P35606 906 aa17.08■□□□□ 0.32
VRK3-206ENST00000594090 RGS2P41220 211 aa17.08■□□□□ 0.32
VRK3-206ENST00000594090 ZNF543Q08ER8 600 aa17.08■□□□□ 0.32
VRK3-206ENST00000594090 MAP2K5Q13163 448 aa17.08■□□□□ 0.32
VRK3-206ENST00000594090 TTBK2Q6IQ55 1244 aa17.08■□□□□ 0.32
VRK3-206ENST00000594090 RAVER2Q9HCJ3 691 aaKnown RBP17.08■□□□□ 0.32
VRK3-206ENST00000594090 BIN2Q9UBW5 565 aaPredicted RBP17.08■□□□□ 0.32
VRK3-206ENST00000594090 PRR12Q9ULL5 1215 aa17.08■□□□□ 0.32
VRK3-206ENST00000594090 STRNO43815 780 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 MYCP01106 439 aaPredicted RBP17.07■□□□□ 0.32
VRK3-206ENST00000594090 INHAP05111 366 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 OAZ1P54368 228 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 UBXN2AP68543 259 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 RNF20Q5VTR2 975 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 SNRNP48Q6IEG0 339 aaKnown RBP17.07■□□□□ 0.32
VRK3-206ENST00000594090 BTNL9Q6UXG8 535 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 CPXCR1Q8N123 301 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 TRIB2Q92519 343 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 GPCPD1Q9NPB8 672 aa17.07■□□□□ 0.32
VRK3-206ENST00000594090 IFIT3O14879 490 aaKnown RBP17.06■□□□□ 0.32
VRK3-206ENST00000594090 HMGCRP04035 888 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 ADORA2AP29274 412 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 SLC16A2P36021 539 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 ANTXR2P58335 489 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 MTFR1Q15390 333 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 SYDE2Q5VT97 1194 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 CHST3Q7LGC8 479 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 ABRAQ8N0Z2 381 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 RIPK3Q9Y572 518 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 ZNF536O15090 1300 aa17.06■□□□□ 0.32
VRK3-206ENST00000594090 ERICH2A1L162 156 aa17.05■□□□□ 0.32
VRK3-206ENST00000594090 HOXC6P09630 235 aa17.05■□□□□ 0.32
VRK3-206ENST00000594090 SART3Q15020 963 aaKnown RBP17.05■□□□□ 0.32
VRK3-206ENST00000594090 GPATCH4Q5T3I0 446 aaKnown RBP17.05■□□□□ 0.32
VRK3-206ENST00000594090 POTEFA5A3E0 1075 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 REC8O95072 547 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 GOLGA8HP0CJ92 632 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 FCER1AP12319 257 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 ZKSCAN1P17029 563 aaPredicted RBP17.04■□□□□ 0.32
VRK3-206ENST00000594090 SNAP25P60880 206 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 COL9A3Q14050 684 aaPredicted RBP17.04■□□□□ 0.32
VRK3-206ENST00000594090 WTAPQ15007 396 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 CCL14Q16627 93 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 TMEM67Q5HYA8 995 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 TRMT44Q8IYL2 757 aaKnown RBP17.04■□□□□ 0.32
VRK3-206ENST00000594090 NPLOC4Q8TAT6 608 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 MMP19Q99542 508 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 TMEM106CQ9BVX2 250 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 RANBP17Q9H2T7 1088 aaKnown RBP17.04■□□□□ 0.32
VRK3-206ENST00000594090 PRC1O43663 620 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 CCL5P13501 91 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 MCM5P33992 734 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 SLC4A3P48751 1232 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 TRIM32Q13049 653 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 ASPRV1Q53RT3 343 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 CCDC174Q6PII3 467 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 DPP9Q86TI2 863 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 IGDCC4Q8TDY8 1250 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 SENP2Q9HC62 589 aa17.04■□□□□ 0.32
VRK3-206ENST00000594090 COBLO75128 1261 aa17.03■□□□□ 0.32
VRK3-206ENST00000594090 PARP1P09874 1014 aaKnown RBP17.03■□□□□ 0.32
VRK3-206ENST00000594090 TSGA10IPQ3SY00 556 aa17.03■□□□□ 0.32
VRK3-206ENST00000594090 MAP3K21Q5TCX8 1036 aa17.03■□□□□ 0.32
VRK3-206ENST00000594090 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.03■□□□□ 0.32
VRK3-206ENST00000594090 RASEFQ8IZ41 740 aa17.03■□□□□ 0.32
VRK3-206ENST00000594090 CHST13Q8NET6 341 aa17.03■□□□□ 0.32
VRK3-206ENST00000594090 AGBL1Q96MI9 1066 aa17.03■□□□□ 0.32
VRK3-206ENST00000594090 MTA3Q9BTC8 594 aa17.03■□□□□ 0.32
VRK3-206ENST00000594090 UNC93B1Q9H1C4 597 aa17.03■□□□□ 0.32
VRK3-206ENST00000594090 ZNFX1Q9P2E3 1918 aaKnown RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 158 ms