RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 RASGRP4Q8TDF6 673 aa22.39■■□□□ 1.17
CLIP3-206ENST00000593074 MYO3BQ8WXR4 1341 aa22.39■■□□□ 1.17
CLIP3-206ENST00000593074 CCDC194A0A1B0GVG4 234 aa22.38■■□□□ 1.17
CLIP3-206ENST00000593074 FMR1Q06787 632 aaKnown RBP eCLIP22.38■■□□□ 1.17
CLIP3-206ENST00000593074 DPYDQ12882 1025 aa22.38■■□□□ 1.17
CLIP3-206ENST00000593074 CT47A1Q5JQC4 288 aaPredicted RBP22.38■■□□□ 1.17
CLIP3-206ENST00000593074 ZMYND12Q9H0C1 365 aa22.38■■□□□ 1.17
CLIP3-206ENST00000593074 MYH8P13535 1937 aa22.38■■□□□ 1.17
CLIP3-206ENST00000593074 LONP1P36776 959 aaKnown RBP22.38■■□□□ 1.17
CLIP3-206ENST00000593074 UBASH3AP57075 661 aa22.38■■□□□ 1.17
CLIP3-206ENST00000593074 SF3B2Q13435 895 aaKnown RBP22.38■■□□□ 1.17
CLIP3-206ENST00000593074 DACT2Q5SW24 774 aa22.38■■□□□ 1.17
CLIP3-206ENST00000593074 ZDHHC15Q96MV8 337 aa22.38■■□□□ 1.17
CLIP3-206ENST00000593074 SLX4Q8IY92 1834 aa22.38■■□□□ 1.17
CLIP3-206ENST00000593074 SERPINC1P01008 464 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 USP17L2Q6R6M4 530 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 KIAA0825Q8IV33 1275 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 SUPT20HQ8NEM7 779 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 CCDC12Q8WUD4 166 aaPredicted RBP22.37■■□□□ 1.17
CLIP3-206ENST00000593074 GSDMAQ96QA5 445 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 MTMR4Q9NYA4 1195 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 SWAP70Q9UH65 585 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 SERPINB13Q9UIV8 391 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 IGKV6D-41A0A0C4DH26 115 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 ZNF18P17022 549 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 ERCC5P28715 1186 aaPredicted RBP22.37■■□□□ 1.17
CLIP3-206ENST00000593074 HDLBPQ00341 1268 aaKnown RBP22.37■■□□□ 1.17
CLIP3-206ENST00000593074 ARMCX5Q6P1M9 558 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 IQUBQ8NA54 791 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 DPF2Q92785 391 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 KCND1Q9NSA2 647 aa22.37■■□□□ 1.17
CLIP3-206ENST00000593074 AFMP43652 599 aa22.36■■□□□ 1.17
CLIP3-206ENST00000593074 BAG6P46379 1132 aa22.36■■□□□ 1.17
CLIP3-206ENST00000593074 AOC3Q16853 763 aa22.36■■□□□ 1.17
CLIP3-206ENST00000593074 PDXDC2PQ6P474 469 aa22.36■■□□□ 1.17
CLIP3-206ENST00000593074 RRP36Q96EU6 259 aaKnown RBP22.36■■□□□ 1.17
CLIP3-206ENST00000593074 NFE2L3Q9Y4A8 694 aa22.36■■□□□ 1.17
CLIP3-206ENST00000593074 DYNC1I1O14576 645 aa22.35■■□□□ 1.17
CLIP3-206ENST00000593074 HLA-DOAP06340 250 aa22.35■■□□□ 1.17
CLIP3-206ENST00000593074 MED15Q96RN5 788 aa22.35■■□□□ 1.17
CLIP3-206ENST00000593074 CPVLQ9H3G5 476 aa22.35■■□□□ 1.17
CLIP3-206ENST00000593074 PDHBP11177 359 aa22.35■■□□□ 1.17
CLIP3-206ENST00000593074 GTF2F1P35269 517 aaKnown RBP eCLIP22.35■■□□□ 1.17
CLIP3-206ENST00000593074 CFAP100Q494V2 611 aa22.35■■□□□ 1.17
CLIP3-206ENST00000593074 GREB1LQ9C091 1923 aaPredicted RBP22.35■■□□□ 1.17
CLIP3-206ENST00000593074 ZNF646O15015 1829 aaPredicted RBP22.34■■□□□ 1.17
CLIP3-206ENST00000593074 USP17L5A8MUK1 530 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 AKR1B1P15121 316 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 SFPQP23246 707 aaKnown RBP eCLIP22.34■■□□□ 1.17
CLIP3-206ENST00000593074 RBM5P52756 815 aaKnown RBP eCLIP22.34■■□□□ 1.17
CLIP3-206ENST00000593074 NAPAP54920 295 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 INF2Q27J81 1249 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 VSTM4Q8IW00 320 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 RIOX1Q9H6W3 641 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 LAD1O00515 517 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 SNHG28P0DPA3 235 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 C16orf45Q96MC5 204 aaPredicted RBP22.34■■□□□ 1.17
CLIP3-206ENST00000593074 PDGFDQ9GZP0 370 aaPredicted RBP22.34■■□□□ 1.17
CLIP3-206ENST00000593074 INTS13Q9NVM9 706 aa22.34■■□□□ 1.17
CLIP3-206ENST00000593074 SEC63Q9UGP8 760 aaKnown RBP22.34■■□□□ 1.17
CLIP3-206ENST00000593074 hCG_1984214I3L0E3 225 aa22.33■■□□□ 1.17
CLIP3-206ENST00000593074 C21orf2O43822 256 aa22.33■■□□□ 1.17
CLIP3-206ENST00000593074 NFIAQ12857 509 aa22.33■■□□□ 1.17
CLIP3-206ENST00000593074 CUL4BQ13620 913 aa22.33■■□□□ 1.17
CLIP3-206ENST00000593074 ASPRV1Q53RT3 343 aa22.33■■□□□ 1.17
CLIP3-206ENST00000593074 KRT25Q7Z3Z0 450 aa22.33■■□□□ 1.17
CLIP3-206ENST00000593074 TRMT44Q8IYL2 757 aaKnown RBP22.33■■□□□ 1.17
CLIP3-206ENST00000593074 ZNF713Q8N859 430 aaPredicted RBP22.33■■□□□ 1.17
CLIP3-206ENST00000593074 ESYT2A0FGR8 921 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 CASP1P29466 404 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 GNA11P29992 359 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 TXLNAP40222 546 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 PRPHP41219 470 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 KCNJ6P48051 423 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 GRIPAP1Q4V328 841 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 C6orf50Q9HD87 102 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 SHMT1P34896 483 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 TPD52L1Q16890 204 aaPredicted RBP22.32■■□□□ 1.16
CLIP3-206ENST00000593074 DEFB132Q7Z7B7 95 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 HOMER1Q86YM7 354 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 MTRQ99707 1265 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 TMEM60Q9H2L4 133 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 SERPINA10Q9UK55 444 aa22.32■■□□□ 1.16
CLIP3-206ENST00000593074 USP27XA6NNY8 438 aa22.31■■□□□ 1.16
CLIP3-206ENST00000593074 PPIP5K2O43314 1243 aa22.31■■□□□ 1.16
CLIP3-206ENST00000593074 GTPBP6O43824 516 aaPredicted RBP22.31■■□□□ 1.16
CLIP3-206ENST00000593074 DTHD1Q6ZMT9 781 aa22.31■■□□□ 1.16
CLIP3-206ENST00000593074 PIGSQ96S52 555 aa22.31■■□□□ 1.16
CLIP3-206ENST00000593074 EHD4Q9H223 541 aa22.31■■□□□ 1.16
CLIP3-206ENST00000593074 DHX36Q9H2U1 1008 aaKnown RBP22.31■■□□□ 1.16
CLIP3-206ENST00000593074 SMCO2A6NFE2 343 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 TTLL1O95922 423 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 CD44P16070 742 aaKnown RBP22.3■■□□□ 1.16
CLIP3-206ENST00000593074 TTLL6Q8N841 843 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 IDI2Q9BXS1 227 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 PCDHAC2Q9Y5I4 1007 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 TMEM232C9JQI7 657 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 TNNT1P13805 278 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 NONOQ15233 471 aaKnown RBP eCLIP22.3■■□□□ 1.16
CLIP3-206ENST00000593074 ZFPM1Q8IX07 1006 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms