RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	CLEC11A	Q9Y240	323 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	BZW2	Q9Y6E2	419 aa	Known RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	CDHR2	Q9BYE9	1310 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790		G3V3G9	751 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	hCG_1984214	I3L0E3	225 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	NDC80	O14777	642 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	RFX1	P22670	979 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	RPL13	P26373	211 aa	Known RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	MCM7	P33993	719 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	CTSW	P56202	376 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	GNGT1	P63211	74 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	PDE4D	Q08499	809 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	TRIM28	Q13263	835 aa	Known RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	NR1I3	Q14994	352 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	SEPT2	Q15019	361 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF174	Q15697	407 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	ARHGAP27	Q6ZUM4	889 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	CPLX4	Q7Z7G2	160 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	REXO1L1P	Q8IX06	675 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	CCDC65	Q8IXS2	484 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF713	Q8N859	430 aa	Predicted RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	JARID2	Q92833	1246 aa	Predicted RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	CABS1	Q96KC9	395 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	CLIC6	Q96NY7	704 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	ANKRD2	Q9GZV1	360 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	CSRNP2	Q9H175	543 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	ABHD10	Q9NUJ1	306 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	BSDC1	Q9NW68	430 aa	Predicted RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	HPSE	Q9Y251	543 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	XRN1	Q8IZH2	1706 aa	Known RBP	3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	SLIT3	O75094	1523 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	ERBB3	P21860	1342 aa		3.93	□□□□□ -1.78
VMP1-216	ENST00000592790	HMGB1P1	B2RPK0	211 aa	Predicted RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	ACTN4	O43707	911 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	PDE8B	O95263	885 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	POTEJ	P0CG39	1038 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	GBP2	P32456	591 aa	Predicted RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	MATR3	P43243	847 aa	Known RBP eCLIP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	NOP2	P46087	812 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	USP14	P54578	494 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	PPARA	Q07869	468 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	TCP11X2	Q5H9J9	407 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RSRC2	Q7L4I2	434 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	TAX1BP1	Q86VP1	789 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RNF10	Q8N5U6	811 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	GPATCH11	Q8N954	259 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	STAG1	Q8WVM7	1258 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	SYMPK	Q92797	1274 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	SYTL4	Q96C24	671 aa	Predicted RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RRP36	Q96EU6	259 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	PAGE5	Q96GU1	130 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	CCDC85A	Q96PX6	553 aa	Predicted RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	CCDC77	Q9BR77	488 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	PLA2G12B	Q9BX93	195 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RAB17	Q9H0T7	212 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	CNOT10	Q9H9A5	744 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	EHMT1	Q9H9B1	1298 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	HDAC9	Q9UKV0	1011 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	SALL1	Q9NSC2	1324 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	MACROD2	A1Z1Q3	448 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	SOWAHD	A6NJG2	315 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	LGALS16	A8MUM7	142 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	ZRANB2	O95218	330 aa	Known RBP eCLIP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	PARP1	P09874	1014 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	SCG2	P13521	617 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	PLA2G4A	P47712	749 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	NAPA	P54920	295 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	PSMD2	Q13200	908 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	TTLL12	Q14166	644 aa	Predicted RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	SHC4	Q6S5L8	630 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	TOGARAM2	Q6ZUX3	1019 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	TAOK1	Q7L7X3	1001 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	STK11IP	Q8N1F8	1099 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	COG1	Q8WTW3	980 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	VTI1A	Q96AJ9	217 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	POM121	Q96HA1	1249 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RUNDC3B	Q96NL0	473 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RIC8A	Q9NPQ8	531 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RAB21	Q9UL25	225 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790		V9GY48	417 aa	Predicted RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	KDM3A	Q9Y4C1	1321 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	NWD1	Q149M9	1564 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	ATRX	P46100	2492 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	GRID2IP	A4D2P6	1211 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	EIF3CL	B5ME19	914 aa	Known RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	ZEB2	O60315	1214 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RPS6KA5	O75582	802 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	PPP1R37	O75864	691 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	FLOT1	O75955	427 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	KIF4A	O95239	1232 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	TBC1D8	O95759	1140 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	TSPY3	P0CV98	308 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	TSPY8	P0CW00	308 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	RXRA	P19793	462 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	CEBPA	P49715	358 aa	Predicted RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	KCNB1	Q14721	858 aa		3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	NAA30	Q147X3	362 aa	Predicted RBP	3.92	□□□□□ -1.78
VMP1-216	ENST00000592790	NONO	Q15233	471 aa	Known RBP eCLIP	3.92	□□□□□ -1.78

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