RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 CLEC11AQ9Y240 323 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 BZW2Q9Y6E2 419 aaKnown RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 CDHR2Q9BYE9 1310 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 G3V3G9 751 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 hCG_1984214I3L0E3 225 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 NDC80O14777 642 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 RFX1P22670 979 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 RPL13P26373 211 aaKnown RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 MCM7P33993 719 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 CTSWP56202 376 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 GNGT1P63211 74 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 PDE4DQ08499 809 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 TRIM28Q13263 835 aaKnown RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 NR1I3Q14994 352 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 SEPT2Q15019 361 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 ZNF174Q15697 407 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 ARHGAP27Q6ZUM4 889 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 CPLX4Q7Z7G2 160 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 REXO1L1PQ8IX06 675 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 CCDC65Q8IXS2 484 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 CRACR2BQ8N4Y2 399 aaPredicted RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 ZNF713Q8N859 430 aaPredicted RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 JARID2Q92833 1246 aaPredicted RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 CABS1Q96KC9 395 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 CLIC6Q96NY7 704 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 ZSCAN10Q96SZ4 725 aaPredicted RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 ANKRD2Q9GZV1 360 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 CSRNP2Q9H175 543 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 ABHD10Q9NUJ1 306 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 BSDC1Q9NW68 430 aaPredicted RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 HPSEQ9Y251 543 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 XRN1Q8IZH2 1706 aaKnown RBP3.93□□□□□ -1.78
VMP1-216ENST00000592790 SLIT3O75094 1523 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 ERBB3P21860 1342 aa3.93□□□□□ -1.78
VMP1-216ENST00000592790 HMGB1P1B2RPK0 211 aaPredicted RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 ACTN4O43707 911 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 PDE8BO95263 885 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 POTEJP0CG39 1038 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 GBP2P32456 591 aaPredicted RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 MATR3P43243 847 aaKnown RBP eCLIP3.92□□□□□ -1.78
VMP1-216ENST00000592790 NOP2P46087 812 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 USP14P54578 494 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 PPARAQ07869 468 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 TCP11X2Q5H9J9 407 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 RSRC2Q7L4I2 434 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 TAX1BP1Q86VP1 789 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 RNF10Q8N5U6 811 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 GPATCH11Q8N954 259 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 STAG1Q8WVM7 1258 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 SYMPKQ92797 1274 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 SYTL4Q96C24 671 aaPredicted RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 RRP36Q96EU6 259 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 PAGE5Q96GU1 130 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 CCDC85AQ96PX6 553 aaPredicted RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 CCDC77Q9BR77 488 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 PLA2G12BQ9BX93 195 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 RAB17Q9H0T7 212 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 CNOT10Q9H9A5 744 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 EHMT1Q9H9B1 1298 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 HDAC9Q9UKV0 1011 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 SALL1Q9NSC2 1324 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 MACROD2A1Z1Q3 448 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 SOWAHDA6NJG2 315 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 LGALS16A8MUM7 142 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 ZRANB2O95218 330 aaKnown RBP eCLIP3.92□□□□□ -1.78
VMP1-216ENST00000592790 PARP1P09874 1014 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 SCG2P13521 617 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 PLA2G4AP47712 749 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 NAPAP54920 295 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 PSMD2Q13200 908 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 TTLL12Q14166 644 aaPredicted RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 SHC4Q6S5L8 630 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 TOGARAM2Q6ZUX3 1019 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 TAOK1Q7L7X3 1001 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 STK11IPQ8N1F8 1099 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 COG1Q8WTW3 980 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 VTI1AQ96AJ9 217 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 POM121Q96HA1 1249 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 RUNDC3BQ96NL0 473 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 RIC8AQ9NPQ8 531 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 RAB21Q9UL25 225 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 V9GY48 417 aaPredicted RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 KDM3AQ9Y4C1 1321 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 NWD1Q149M9 1564 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 ATRXP46100 2492 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 GRID2IPA4D2P6 1211 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 EIF3CLB5ME19 914 aaKnown RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 ZEB2O60315 1214 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 RPS6KA5O75582 802 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 PPP1R37O75864 691 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 FLOT1O75955 427 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 KIF4AO95239 1232 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 TBC1D8O95759 1140 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 TSPY3P0CV98 308 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 TSPY8P0CW00 308 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 RXRAP19793 462 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 CEBPAP49715 358 aaPredicted RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 KCNB1Q14721 858 aa3.92□□□□□ -1.78
VMP1-216ENST00000592790 NAA30Q147X3 362 aaPredicted RBP3.92□□□□□ -1.78
VMP1-216ENST00000592790 NONOQ15233 471 aaKnown RBP eCLIP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms