RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 SNAI1O95863 264 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-209ENST00000590588 POLR3DP05423 398 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-209ENST00000590588 COPB2P35606 906 aa13.37□□□□□ -0.27
ZNF540-209ENST00000590588 STAT3P40763 770 aa13.37□□□□□ -0.27
ZNF540-209ENST00000590588 TMEM67Q5HYA8 995 aa13.37□□□□□ -0.27
ZNF540-209ENST00000590588 GNASQ5JWF2 1037 aa13.37□□□□□ -0.27
ZNF540-209ENST00000590588 MAMDC4Q6UXC1 1216 aa13.37□□□□□ -0.27
ZNF540-209ENST00000590588 ZNF512BQ96KM6 892 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-209ENST00000590588 HIPK3Q9H422 1215 aa13.37□□□□□ -0.27
ZNF540-209ENST00000590588 SMC4Q9NTJ3 1288 aa13.37□□□□□ -0.27
ZNF540-209ENST00000590588 ZHX1Q9UKY1 873 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-209ENST00000590588 CDK5RAP2Q96SN8 1893 aa13.37□□□□□ -0.27
ZNF540-209ENST00000590588 WDR46O15213 610 aaKnown RBP13.36□□□□□ -0.27
ZNF540-209ENST00000590588 GNAI3P08754 354 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 ATP2A2P16615 1042 aaKnown RBP13.36□□□□□ -0.27
ZNF540-209ENST00000590588 ZAP70P43403 619 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 GJA9P57773 515 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 GABPAQ06546 454 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 TMEM179Q6ZVK1 233 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 SPICE1Q8N0Z3 855 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 API5Q9BZZ5 524 aaKnown RBP13.36□□□□□ -0.27
ZNF540-209ENST00000590588 SH2D4AQ9H788 454 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 ARHGEF10LQ9HCE6 1279 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 PIH1D3Q9NQM4 214 aaKnown RBP13.36□□□□□ -0.27
ZNF540-209ENST00000590588 TMX2Q9Y320 296 aa13.36□□□□□ -0.27
ZNF540-209ENST00000590588 MYH1P12882 1939 aa13.35□□□□□ -0.27
ZNF540-209ENST00000590588 ZBBXA8MT70 800 aa13.35□□□□□ -0.27
ZNF540-209ENST00000590588 CCL23P55773 120 aa13.35□□□□□ -0.27
ZNF540-209ENST00000590588 IRX5P78411 483 aaPredicted RBP13.35□□□□□ -0.27
ZNF540-209ENST00000590588 ACVR2BQ13705 512 aa13.35□□□□□ -0.27
ZNF540-209ENST00000590588 DDX11Q96FC9 970 aa13.35□□□□□ -0.27
ZNF540-209ENST00000590588 UPF3AQ9H1J1 476 aaKnown RBP13.35□□□□□ -0.27
ZNF540-209ENST00000590588 VCPKMTQ9H867 229 aa13.35□□□□□ -0.27
ZNF540-209ENST00000590588 GPR108Q9NPR9 543 aa13.35□□□□□ -0.27
ZNF540-209ENST00000590588 NOB1Q9ULX3 412 aaKnown RBP13.35□□□□□ -0.27
ZNF540-209ENST00000590588 A0A0G2JMZ2 1700 aa13.35□□□□□ -0.27
ZNF540-209ENST00000590588 E9PSI1 815 aa13.34□□□□□ -0.27
ZNF540-209ENST00000590588 VWA5AO00534 786 aa13.34□□□□□ -0.27
ZNF540-209ENST00000590588 IDH1O75874 414 aaKnown RBP13.34□□□□□ -0.27
ZNF540-209ENST00000590588 TMED8Q6PL24 325 aaPredicted RBP13.34□□□□□ -0.27
ZNF540-209ENST00000590588 MAGEB6Q8N7X4 407 aa13.34□□□□□ -0.27
ZNF540-209ENST00000590588 SLC43A3Q8NBI5 491 aa13.34□□□□□ -0.27
ZNF540-209ENST00000590588 DBNDD2Q9BQY9 259 aa13.34□□□□□ -0.27
ZNF540-209ENST00000590588 SEZ6LQ9BYH1 1024 aa13.34□□□□□ -0.27
ZNF540-209ENST00000590588 ABHD16BQ9H3Z7 469 aa13.34□□□□□ -0.27
ZNF540-209ENST00000590588 CERS4Q9HA82 394 aa13.34□□□□□ -0.27
ZNF540-209ENST00000590588 PRRC2BQ5JSZ5 2229 aaKnown RBP13.33□□□□□ -0.27
ZNF540-209ENST00000590588 CABYRO75952 493 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 CA3P07451 260 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 CCDC144BQ3MJ40 725 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 TNNI3KQ59H18 835 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 KRT40Q6A162 431 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 ZNF467Q7Z7K2 595 aaPredicted RBP13.33□□□□□ -0.28
ZNF540-209ENST00000590588 SIAH1Q8IUQ4 282 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 KCNH6Q9H252 994 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 CD320Q9NPF0 282 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 ZNF214Q9UL59 606 aaPredicted RBP13.33□□□□□ -0.28
ZNF540-209ENST00000590588 FPGT-TNNI3KV9GXZ4 949 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 GBF1Q92538 1859 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 UMODL1Q5DID0 1318 aa13.33□□□□□ -0.28
ZNF540-209ENST00000590588 PFKMP08237 780 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 ALADP13716 330 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 NKX3-2P78367 333 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 NHLH1Q02575 133 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 ICA1Q05084 483 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 ITGA7Q13683 1181 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 CSPP1Q1MSJ5 1256 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 ARNTL2Q8WYA1 636 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 UIMC1Q96RL1 719 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 NOC4LQ9BVI4 516 aaKnown RBP13.32□□□□□ -0.28
ZNF540-209ENST00000590588 MCM9Q9NXL9 1143 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.32□□□□□ -0.28
ZNF540-209ENST00000590588 SWAP70Q9UH65 585 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 PPP1R9AQ9ULJ8 1098 aa13.32□□□□□ -0.28
ZNF540-209ENST00000590588 LRRC37A2A6NM11 1700 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 DNAJC25-GNG10A0A024R161 153 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 EPOPA6NHQ4 379 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 KIF28PB7ZC32 967 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 CTAGE5O15320 804 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 ADCY6O43306 1168 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 GJD3Q8N144 294 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 PHOSPHO2Q8TCD6 241 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 WNT8AQ9H1J5 351 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 FBXO28Q9NVF7 368 aa13.31□□□□□ -0.28
ZNF540-209ENST00000590588 TRANK1O15050 2925 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 PNMA6EA0A0J9YXQ4 647 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 GNAI2P04899 355 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 ACTN1P12814 892 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 BEX3Q00994 111 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 TTLL4Q14679 1199 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 CXCL17Q6UXB2 119 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 FAM9BQ8IZU0 186 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 REPS2Q8NFH8 660 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 SCLYQ96I15 445 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 CCDC17Q96LX7 622 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 RIOK1Q9BRS2 568 aaKnown RBP13.3□□□□□ -0.28
ZNF540-209ENST00000590588 TEX13BQ9BXU2 312 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 CRNKL1Q9BZJ0 848 aaKnown RBP13.3□□□□□ -0.28
ZNF540-209ENST00000590588 LMCD1Q9NZU5 365 aa13.3□□□□□ -0.28
ZNF540-209ENST00000590588 MAGEB6P1A0A0J9YX57 407 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms