RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 PRKAR2AP13861 404 aaKnown RBP12.79□□□□□ -0.36
CLIP3-203ENST00000586457 ADORA2AP29274 412 aa12.79□□□□□ -0.36
CLIP3-203ENST00000586457 SART3Q15020 963 aaKnown RBP12.79□□□□□ -0.36
CLIP3-203ENST00000586457 KCTD1Q719H9 257 aa12.79□□□□□ -0.36
CLIP3-203ENST00000586457 RIOX2Q8IUF8 465 aa12.79□□□□□ -0.36
CLIP3-203ENST00000586457 ABRAQ8N0Z2 381 aa12.79□□□□□ -0.36
CLIP3-203ENST00000586457 TMEM47Q9BQJ4 181 aa12.79□□□□□ -0.36
CLIP3-203ENST00000586457 ZKSCAN3Q9BRR0 538 aa12.79□□□□□ -0.36
CLIP3-203ENST00000586457 ADAMTS5Q9UNA0 930 aa12.79□□□□□ -0.36
CLIP3-203ENST00000586457 B4E1Z4 1266 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 GJA8P48165 433 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 OAZ1P54368 228 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 GRB14Q14449 540 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 POTEEQ6S8J3 1075 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 DGKHQ86XP1 1220 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 TBC1D10CQ8IV04 446 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 ANKRD35Q8N283 1001 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 U2AF1L4Q8WU68 220 aaKnown RBP12.78□□□□□ -0.36
CLIP3-203ENST00000586457 TRIB2Q92519 343 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 ZSCAN10Q96SZ4 725 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-203ENST00000586457 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.78□□□□□ -0.36
CLIP3-203ENST00000586457 RAVER2Q9HCJ3 691 aaKnown RBP12.78□□□□□ -0.36
CLIP3-203ENST00000586457 GPCPD1Q9NPB8 672 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 FBXO40Q9UH90 709 aa12.78□□□□□ -0.36
CLIP3-203ENST00000586457 SGSM2O43147 1006 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 CCL14Q16627 93 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 BMP2KLQ5H9B9 411 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 USP6NLQ92738 828 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 DPF3Q92784 378 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 SLC38A10Q9HBR0 1119 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 ANO2Q9NQ90 1003 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 HOMER2Q9NSB8 354 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 ZSWIM5Q9P217 1185 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 MYH4Q9Y623 1939 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 NEDD4P46934 1319 aa12.77□□□□□ -0.37
CLIP3-203ENST00000586457 DHX16O60231 1041 aaKnown RBP12.76□□□□□ -0.37
CLIP3-203ENST00000586457 PLA2G6O60733 806 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 HOXC6P09630 235 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 PTH1RQ03431 593 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 CACNB2Q08289 660 aaPredicted RBP12.76□□□□□ -0.37
CLIP3-203ENST00000586457 IFIT1BQ5T764 474 aaKnown RBP12.76□□□□□ -0.37
CLIP3-203ENST00000586457 RNF20Q5VTR2 975 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 CCDC174Q6PII3 467 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 CHST13Q8NET6 341 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 NCOA7Q8NI08 942 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 HTATIP2Q9BUP3 242 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 PNMA2Q9UL42 364 aa12.76□□□□□ -0.37
CLIP3-203ENST00000586457 ZNF214Q9UL59 606 aaPredicted RBP12.76□□□□□ -0.37
CLIP3-203ENST00000586457 FRMPD2Q68DX3 1309 aaPredicted RBP12.76□□□□□ -0.37
CLIP3-203ENST00000586457 ATP2A1O14983 1001 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 MSCO60682 206 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 FARP2O94887 1054 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-203ENST00000586457 PGK2P07205 417 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 ALAS1P13196 640 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 CYP2C19P33261 490 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 TRIM32Q13049 653 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 GPATCH4Q5T3I0 446 aaKnown RBP12.75□□□□□ -0.37
CLIP3-203ENST00000586457 ERICH6BQ5W0A0 696 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 PNMA1Q8ND90 353 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 MAP4K1Q92918 833 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 NBPF3Q9H094 633 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 PAK6Q9NQU5 681 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-203ENST00000586457 PPP4R2Q9NY27 417 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 PRR12Q9ULL5 1215 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 TACC3Q9Y6A5 838 aa12.75□□□□□ -0.37
CLIP3-203ENST00000586457 GREB1LQ9C091 1923 aaPredicted RBP12.74□□□□□ -0.37
CLIP3-203ENST00000586457 TNKSO95271 1327 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 IFIT3O14879 490 aaKnown RBP12.74□□□□□ -0.37
CLIP3-203ENST00000586457 CDC45O75419 566 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 MYCNP04198 464 aaPredicted RBP12.74□□□□□ -0.37
CLIP3-203ENST00000586457 PARP1P09874 1014 aaKnown RBP12.74□□□□□ -0.37
CLIP3-203ENST00000586457 SLC16A2P36021 539 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 TKFCQ3LXA3 575 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 SYDE2Q5VT97 1194 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 OLFML2BQ68BL8 750 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 NECAB2Q7Z6G3 386 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 NPLOC4Q8TAT6 608 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 TRERF1Q96PN7 1200 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 ESYT1Q9BSJ8 1104 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 ACAD9Q9H845 621 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 CCPG1Q9ULG6 757 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 CNPY2Q9Y2B0 182 aa12.74□□□□□ -0.37
CLIP3-203ENST00000586457 DIS3Q9Y2L1 958 aaKnown RBP12.74□□□□□ -0.37
CLIP3-203ENST00000586457 RBM8AQ9Y5S9 174 aaKnown RBP12.74□□□□□ -0.37
CLIP3-203ENST00000586457 DOCK3Q8IZD9 2030 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 E7EWF7 191 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 COBLO75128 1261 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 CYP21A2P08686 494 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 PDHBP11177 359 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 CCND3P30281 292 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-203ENST00000586457 NOVP48745 357 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 SNAP25P60880 206 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 ANKLE1Q8NAG6 615 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 REPS2Q8NFH8 660 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 MAML3Q96JK9 1138 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 AGBL1Q96MI9 1066 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 IL25Q9H293 177 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 RNF146Q9NTX7 359 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 RIPK3Q9Y572 518 aa12.73□□□□□ -0.37
CLIP3-203ENST00000586457 POTEB2H3BUK9 544 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms