RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 RAVER2Q9HCJ3 691 aaKnown RBP13.93□□□□□ -0.18
LIG3-207ENST00000586119 ECHDC1Q9NTX5 307 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 DIS3Q9Y2L1 958 aaKnown RBP13.93□□□□□ -0.18
LIG3-207ENST00000586119 UNC80Q8N2C7 3258 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 IGKV6D-41A0A0C4DH26 115 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 A0A1W2PQ45 241 aaPredicted RBP13.92□□□□□ -0.18
LIG3-207ENST00000586119 A0A1W2PQY0 241 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 ADCY6O43306 1168 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 PQBP1O60828 265 aaKnown RBP13.92□□□□□ -0.18
LIG3-207ENST00000586119 ZNF697Q5TEC3 545 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 C1orf53Q5VUE5 145 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.92□□□□□ -0.18
LIG3-207ENST00000586119 KBTBD3Q8NAB2 608 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 FGD4Q96M96 766 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 SEC62Q99442 399 aaKnown RBP13.92□□□□□ -0.18
LIG3-207ENST00000586119 SLF1Q9BQI6 1058 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 NYAP2Q9P242 653 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 ARPP21Q9UBL0 812 aaPredicted RBP13.92□□□□□ -0.18
LIG3-207ENST00000586119 CUL9Q8IWT3 2517 aa13.92□□□□□ -0.18
LIG3-207ENST00000586119 MYO9BQ13459 2157 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 RNF113AO15541 343 aaKnown RBP13.91□□□□□ -0.18
LIG3-207ENST00000586119 GPAA1O43292 621 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 CLTBP09497 229 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 AKR1A1P14550 325 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 FAAP100Q0VG06 881 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 RNF180Q86T96 592 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 MYLIPQ8WY64 445 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 KIFC2Q96AC6 838 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 DDX11Q96FC9 970 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 NRBP1Q9UHY1 535 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 TACC3Q9Y6A5 838 aa13.91□□□□□ -0.18
LIG3-207ENST00000586119 DNAJC25-GNG10A0A024R161 153 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 KIAA0355O15063 1070 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 PTGS1P23219 599 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 ACLYP53396 1101 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 KCNA10Q16322 511 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 CCSAPQ6IQ19 270 aaPredicted RBP13.9□□□□□ -0.18
LIG3-207ENST00000586119 LRRC47Q8N1G4 583 aaKnown RBP13.9□□□□□ -0.18
LIG3-207ENST00000586119 PRPF38AQ8NAV1 312 aaKnown RBP13.9□□□□□ -0.18
LIG3-207ENST00000586119 KLHDC9Q8NEP7 349 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 OTUD7AQ8TE49 926 aaPredicted RBP13.9□□□□□ -0.18
LIG3-207ENST00000586119 APPBP2Q92624 585 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 CEP95Q96GE4 821 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 TEX13BQ9BXU2 312 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 DCTPP1Q9H773 170 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 INCENPQ9NQS7 918 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 TMEM39AQ9NV64 488 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 ZHX1Q9UKY1 873 aaPredicted RBP13.9□□□□□ -0.18
LIG3-207ENST00000586119 DDX49Q9Y6V7 483 aaKnown RBP13.9□□□□□ -0.18
LIG3-207ENST00000586119 EYSQ5T1H1 3165 aa13.9□□□□□ -0.18
LIG3-207ENST00000586119 SYNRGQ9UMZ2 1314 aa13.9□□□□□ -0.19
LIG3-207ENST00000586119 APPP05067 770 aa13.89□□□□□ -0.19
LIG3-207ENST00000586119 RAG1P15918 1043 aa13.89□□□□□ -0.19
LIG3-207ENST00000586119 IFNL3Q8IZI9 196 aa13.89□□□□□ -0.19
LIG3-207ENST00000586119 ZNF444Q8N0Y2 327 aaPredicted RBP13.89□□□□□ -0.19
LIG3-207ENST00000586119 FAM184BQ9ULE4 1060 aa13.89□□□□□ -0.19
LIG3-207ENST00000586119 CNPY2Q9Y2B0 182 aa13.89□□□□□ -0.19
LIG3-207ENST00000586119 PATL2C9JE40 543 aaKnown RBP13.88□□□□□ -0.19
LIG3-207ENST00000586119 ZBED4O75132 1171 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 TDO2P48775 406 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 SNAP25P60880 206 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 SMAD3P84022 425 aaKnown RBP13.88□□□□□ -0.19
LIG3-207ENST00000586119 CNTN2Q02246 1040 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 ACVR2BQ13705 512 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 GIMAP6Q6P9H5 292 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 MAMDC4Q6UXC1 1216 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 MKL1Q969V6 931 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 RNPC3Q96LT9 517 aaKnown RBP13.88□□□□□ -0.19
LIG3-207ENST00000586119 CHMP4BQ9H444 224 aaKnown RBP13.88□□□□□ -0.19
LIG3-207ENST00000586119 SLC38A10Q9HBR0 1119 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 STARD7Q9NQZ5 370 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.88□□□□□ -0.19
LIG3-207ENST00000586119 MTMR4Q9NYA4 1195 aa13.88□□□□□ -0.19
LIG3-207ENST00000586119 PRUNE2Q8WUY3 3088 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 ROBO3Q96MS0 1386 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 COPB2P35606 906 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 CCDC144BQ3MJ40 725 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 SLFN13Q68D06 897 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 C16orf59Q7L2K0 433 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 RASGRP2Q7LDG7 609 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 ANKRD33Q7Z3H0 272 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 MAFAQ8NHW3 353 aaPredicted RBP13.87□□□□□ -0.19
LIG3-207ENST00000586119 AGBL1Q96MI9 1066 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 YTHDC1Q96MU7 727 aaKnown RBP13.87□□□□□ -0.19
LIG3-207ENST00000586119 TSEN34Q9BSV6 310 aaKnown RBP13.87□□□□□ -0.19
LIG3-207ENST00000586119 HOMER2Q9NSB8 354 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 PCDHB15Q9Y5E8 787 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 SYNGAP1Q96PV0 1343 aa13.87□□□□□ -0.19
LIG3-207ENST00000586119 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.86□□□□□ -0.19
LIG3-207ENST00000586119 GRXCR1A8MXD5 290 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 TMEM232C9JQI7 657 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 ATP2A1O14983 1001 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 CTAGE5O15320 804 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 DUSP11O75319 330 aaKnown RBP13.86□□□□□ -0.19
LIG3-207ENST00000586119 ASGR1P07306 291 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 C6orf222P0C671 652 aaPredicted RBP13.86□□□□□ -0.19
LIG3-207ENST00000586119 CDK7P50613 346 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 BEX3Q00994 111 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 TFAP4Q01664 338 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 FPGSQ05932 587 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms