RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 C16orf59Q7L2K0 433 aa26.22■■□□□ 1.79
SHMT1-210ENST00000583780 RPAP2Q8IXW5 612 aaPredicted RBP26.22■■□□□ 1.79
SHMT1-210ENST00000583780 USP38Q8NB14 1042 aa26.22■■□□□ 1.79
SHMT1-210ENST00000583780 GOPCQ9HD26 462 aa26.22■■□□□ 1.79
SHMT1-210ENST00000583780 MCM3APO60318 1980 aa26.22■■□□□ 1.79
SHMT1-210ENST00000583780 DNAJC25-GNG10A0A024R161 153 aa26.21■■□□□ 1.79
SHMT1-210ENST00000583780 TIMP1P01033 207 aa26.21■■□□□ 1.79
SHMT1-210ENST00000583780 UBE3CQ15386 1083 aa26.21■■□□□ 1.79
SHMT1-210ENST00000583780 MSL3Q8N5Y2 521 aaKnown RBP26.21■■□□□ 1.79
SHMT1-210ENST00000583780 HAUS7Q99871 368 aa26.21■■□□□ 1.79
SHMT1-210ENST00000583780 STARD7Q9NQZ5 370 aa26.21■■□□□ 1.79
SHMT1-210ENST00000583780 CNPY2Q9Y2B0 182 aa26.21■■□□□ 1.79
SHMT1-210ENST00000583780 MYADML2A6NDP7 307 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 DCDC2CA8MYV0 355 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 DNAJB2P25686 324 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 COPB2P35606 906 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 CDK7P50613 346 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 NUP88Q99567 741 aaPredicted RBP26.2■■□□□ 1.78
SHMT1-210ENST00000583780 BUD13Q9BRD0 619 aaKnown RBP eCLIP26.2■■□□□ 1.78
SHMT1-210ENST00000583780 PUS7LQ9H0K6 701 aaKnown RBP26.2■■□□□ 1.78
SHMT1-210ENST00000583780 BCL11AQ9H165 835 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 TBX21Q9UL17 535 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 FAM184BQ9ULE4 1060 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 SLC4A4Q9Y6R1 1079 aa26.2■■□□□ 1.78
SHMT1-210ENST00000583780 MOXD2PA6NHM9 499 aa26.19■■□□□ 1.78
SHMT1-210ENST00000583780 NUP133Q8WUM0 1156 aa26.19■■□□□ 1.78
SHMT1-210ENST00000583780 SYMPKQ92797 1274 aaKnown RBP26.19■■□□□ 1.78
SHMT1-210ENST00000583780 ZNF576Q9H609 170 aa26.19■■□□□ 1.78
SHMT1-210ENST00000583780 SYNGAP1Q96PV0 1343 aa26.18■■□□□ 1.78
SHMT1-210ENST00000583780 ADCY6O43306 1168 aa26.18■■□□□ 1.78
SHMT1-210ENST00000583780 RAD21O60216 631 aa26.18■■□□□ 1.78
SHMT1-210ENST00000583780 DUSP11O75319 330 aaKnown RBP26.18■■□□□ 1.78
SHMT1-210ENST00000583780 AMOTL1Q8IY63 956 aa26.18■■□□□ 1.78
SHMT1-210ENST00000583780 SLF1Q9BQI6 1058 aa26.18■■□□□ 1.78
SHMT1-210ENST00000583780 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.18■■□□□ 1.78
SHMT1-210ENST00000583780 MUC3AQ02505 3323 aa26.17■■□□□ 1.78
SHMT1-210ENST00000583780 RAB11FIP3O75154 756 aa26.17■■□□□ 1.78
SHMT1-210ENST00000583780 SNRNP48Q6IEG0 339 aaKnown RBP26.17■■□□□ 1.78
SHMT1-210ENST00000583780 MFSD5Q6N075 450 aa26.17■■□□□ 1.78
SHMT1-210ENST00000583780 TEX13BQ9BXU2 312 aa26.17■■□□□ 1.78
SHMT1-210ENST00000583780 F5H6K3 240 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 RASA1P20936 1047 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 CST5P28325 142 aaPredicted RBP26.16■■□□□ 1.78
SHMT1-210ENST00000583780 KLRC3Q07444 240 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 TMEM240Q5SV17 173 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 RASIP1Q5U651 963 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 DDX11Q96FC9 970 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 FGD4Q96M96 766 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 ZBTB40Q9NUA8 1239 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 NYAP2Q9P242 653 aa26.16■■□□□ 1.78
SHMT1-210ENST00000583780 ELP1O95163 1332 aa26.15■■□□□ 1.78
SHMT1-210ENST00000583780 GRXCR1A8MXD5 290 aa26.15■■□□□ 1.78
SHMT1-210ENST00000583780 ATP2A1O14983 1001 aa26.15■■□□□ 1.78
SHMT1-210ENST00000583780 ACVR2BQ13705 512 aa26.15■■□□□ 1.78
SHMT1-210ENST00000583780 ZNF467Q7Z7K2 595 aaPredicted RBP26.15■■□□□ 1.78
SHMT1-210ENST00000583780 PRPF38AQ8NAV1 312 aaKnown RBP26.15■■□□□ 1.78
SHMT1-210ENST00000583780 TIFAQ96CG3 184 aa26.15■■□□□ 1.78
SHMT1-210ENST00000583780 MYH4Q9Y623 1939 aa26.14■■□□□ 1.78
SHMT1-210ENST00000583780 ASGR1P07306 291 aa26.14■■□□□ 1.78
SHMT1-210ENST00000583780 PBX2P40425 430 aa26.14■■□□□ 1.78
SHMT1-210ENST00000583780 SBK1Q52WX2 424 aa26.14■■□□□ 1.78
SHMT1-210ENST00000583780 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.14■■□□□ 1.78
SHMT1-210ENST00000583780 DDRGK1Q96HY6 314 aa26.14■■□□□ 1.78
SHMT1-210ENST00000583780 STRBPQ96SI9 672 aaKnown RBP26.14■■□□□ 1.78
SHMT1-210ENST00000583780 ZHX1Q9UKY1 873 aaPredicted RBP26.14■■□□□ 1.78
SHMT1-210ENST00000583780 CTAGE5O15320 804 aa26.13■■□□□ 1.77
SHMT1-210ENST00000583780 HMMRO75330 724 aa26.13■■□□□ 1.77
SHMT1-210ENST00000583780 NDUFB10O96000 172 aa26.13■■□□□ 1.77
SHMT1-210ENST00000583780 TJAP1Q5JTD0 557 aa26.13■■□□□ 1.77
SHMT1-210ENST00000583780 CPXCR1Q8N123 301 aa26.13■■□□□ 1.77
SHMT1-210ENST00000583780 GLT1D1Q96MS3 346 aa26.13■■□□□ 1.77
SHMT1-210ENST00000583780 PBX4Q9BYU1 374 aa26.13■■□□□ 1.77
SHMT1-210ENST00000583780 UPF3AQ9H1J1 476 aaKnown RBP26.13■■□□□ 1.77
SHMT1-210ENST00000583780 CDKN2AIPQ9NXV6 580 aaPredicted RBP26.13■■□□□ 1.77
SHMT1-210ENST00000583780 GSG1L2A8MUP6 293 aa26.12■■□□□ 1.77
SHMT1-210ENST00000583780 GJA9P57773 515 aa26.12■■□□□ 1.77
SHMT1-210ENST00000583780 CCDC144BQ3MJ40 725 aa26.12■■□□□ 1.77
SHMT1-210ENST00000583780 KATNBL1Q9H079 304 aa26.12■■□□□ 1.77
SHMT1-210ENST00000583780 ABHD16BQ9H3Z7 469 aa26.12■■□□□ 1.77
SHMT1-210ENST00000583780 ARPP21Q9UBL0 812 aaPredicted RBP26.12■■□□□ 1.77
SHMT1-210ENST00000583780 IGKV6D-41A0A0C4DH26 115 aa26.11■■□□□ 1.77
SHMT1-210ENST00000583780 ARVCFO00192 962 aa26.11■■□□□ 1.77
SHMT1-210ENST00000583780 C6orf222P0C671 652 aaPredicted RBP26.11■■□□□ 1.77
SHMT1-210ENST00000583780 CSF2RAP15509 400 aa26.11■■□□□ 1.77
SHMT1-210ENST00000583780 SLC4A3P48751 1232 aa26.11■■□□□ 1.77
SHMT1-210ENST00000583780 STK11IPQ8N1F8 1099 aa26.11■■□□□ 1.77
SHMT1-210ENST00000583780 PCSK9Q8NBP7 692 aaKnown RBP26.11■■□□□ 1.77
SHMT1-210ENST00000583780 MKL1Q969V6 931 aa26.11■■□□□ 1.77
SHMT1-210ENST00000583780 RAVER2Q9HCJ3 691 aaKnown RBP26.11■■□□□ 1.77
SHMT1-210ENST00000583780 CLIP2Q9UDT6 1046 aa26.11■■□□□ 1.77
SHMT1-210ENST00000583780 CHD9Q3L8U1 2897 aa26.11■■□□□ 1.77
SHMT1-210ENST00000583780 NKX3-2P78367 333 aa26.1■■□□□ 1.77
SHMT1-210ENST00000583780 PPIGQ13427 754 aaKnown RBP eCLIP26.1■■□□□ 1.77
SHMT1-210ENST00000583780 ZNF365Q70YC5 407 aa26.1■■□□□ 1.77
SHMT1-210ENST00000583780 FAM126BQ8IXS8 530 aa26.1■■□□□ 1.77
SHMT1-210ENST00000583780 SLC38A10Q9HBR0 1119 aa26.1■■□□□ 1.77
SHMT1-210ENST00000583780 MROH7Q68CQ1 1323 aa26.1■■□□□ 1.77
SHMT1-210ENST00000583780 ZBED4O75132 1171 aa26.09■■□□□ 1.77
SHMT1-210ENST00000583780 ACRP10323 421 aa26.09■■□□□ 1.77
SHMT1-210ENST00000583780 GNASQ5JWF2 1037 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms