RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LRRC47Q8N1G4 583 aaKnown RBP7.38□□□□□ -1.23
VPS53-219ENST00000576019 ZSCAN1Q8NBB4 408 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 RIN3Q8TB24 985 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 GRIN3AQ8TCU5 1115 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 STK35Q8TDR2 534 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 EXOC2Q96KP1 924 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 CLUHP3Q96NS8 147 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 KIF2CQ99661 725 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 RUBCNLQ9H714 662 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 CBX8Q9HC52 389 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 TIMMDC1Q9NPL8 285 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 PCDHB10Q9UN67 800 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 KCNH4Q9UQ05 1017 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 TRPM3Q9HCF6 1732 aaPredicted RBP7.38□□□□□ -1.23
VPS53-219ENST00000576019 TRPM1Q7Z4N2 1603 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 NRXN1Q9ULB1 1477 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 PASKQ96RG2 1323 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 WDR33Q9C0J8 1336 aaKnown RBP7.37□□□□□ -1.23
VPS53-219ENST00000576019 FAM86C2PA6NEL3 165 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 NRG2O14511 850 aaPredicted RBP7.37□□□□□ -1.23
VPS53-219ENST00000576019 NFKB1P19838 968 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 CCNFP41002 786 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 PRR20EP86478 221 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 PRR20CP86479 221 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 PRR20DP86480 221 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 PRR20BP86481 221 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 PRR20AP86496 221 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 RPL6Q02878 288 aaKnown RBP7.37□□□□□ -1.23
VPS53-219ENST00000576019 PTPN11Q06124 597 aaPredicted RBP7.37□□□□□ -1.23
VPS53-219ENST00000576019 PPP2R3AQ06190 1150 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 MTMR1Q13613 665 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 ZFYVE27Q5T4F4 411 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 SLC4A10Q6U841 1118 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 ARHGAP27Q6ZUM4 889 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 LHFPL2Q6ZUX7 228 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 SULF2Q8IWU5 870 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 SAMD3Q8N6K7 520 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 CEP120Q8N960 986 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 MARCH10Q8NA82 808 aaPredicted RBP7.37□□□□□ -1.23
VPS53-219ENST00000576019 TTC8Q8TAM2 541 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 PNMA5Q96PV4 448 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 TM9SF2Q99805 663 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 ARPC5LQ9BPX5 153 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 RUSC1Q9BVN2 902 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 GSX2Q9BZM3 304 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 MUC3BQ9H195 1237 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 NOB1Q9ULX3 412 aaKnown RBP7.37□□□□□ -1.23
VPS53-219ENST00000576019 CYP8B1Q9UNU6 501 aa7.37□□□□□ -1.23
VPS53-219ENST00000576019 RANBP2P49792 3224 aaKnown RBP7.37□□□□□ -1.23
VPS53-219ENST00000576019 NAIPQ13075 1403 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 KIAA1551Q9HCM1 1747 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 HMGB1P1B2RPK0 211 aaPredicted RBP7.36□□□□□ -1.23
VPS53-219ENST00000576019 NFKBIEO00221 500 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 SPINT1O43278 529 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 GFRA3O60609 400 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 ATE1O95260 518 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 SDSP20132 328 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 NME2P22392 152 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 ITKQ08881 620 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 SFSWAPQ12872 951 aaKnown RBP7.36□□□□□ -1.23
VPS53-219ENST00000576019 STRN3Q13033 797 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 NCAPHQ15003 741 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 DDB1Q16531 1140 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 MSL1Q68DK7 614 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 LRRTM3Q86VH5 581 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 TMEM102Q8N9M5 508 aaPredicted RBP7.36□□□□□ -1.23
VPS53-219ENST00000576019 LEO1Q8WVC0 666 aaPredicted RBP7.36□□□□□ -1.23
VPS53-219ENST00000576019 TMEM40Q8WWA1 233 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 NXPE3Q969Y0 559 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 CCDC8Q9H0W5 538 aaPredicted RBP7.36□□□□□ -1.23
VPS53-219ENST00000576019 AASDHPPTQ9NRN7 309 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 TFCP2L1Q9NZI6 479 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 SFMBT1Q9UHJ3 866 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 RAPGEFL1Q9UHV5 662 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 PDZRN3Q9UPQ7 1066 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 BRCA2P51587 3418 aa7.36□□□□□ -1.23
VPS53-219ENST00000576019 LTBP3Q9NS15 1303 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 IQCA1LA6NCM1 817 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 MEIS3P2A8K0S8 358 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 PLD2O14939 933 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 GDF9O60383 454 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 WDHD1O75717 1129 aaPredicted RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 EYA4O95677 639 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 PIN1Q13526 163 aaPredicted RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 CHRNA2Q15822 529 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 ZC3H12BQ5HYM0 836 aaKnown RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 FAM209AQ5JX71 171 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 KIAA1211LQ6NV74 962 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 RNF217Q8TC41 542 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 HOOK2Q96ED9 719 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 CDC6Q99741 560 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 TSEN34Q9BSV6 310 aaKnown RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 RTFDC1Q9BY42 306 aaPredicted RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 MAF1Q9H063 256 aa7.35□□□□□ -1.23
VPS53-219ENST00000576019 GNL3LQ9NVN8 582 aaKnown RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 BSDC1Q9NW68 430 aaPredicted RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 TLR7Q9NYK1 1049 aaKnown RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 MRPS23Q9Y3D9 190 aaKnown RBP7.35□□□□□ -1.23
VPS53-219ENST00000576019 PRR36Q9H6K5 1346 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 COL18A1P39060 1754 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms