RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 RTP1P59025 263 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 PICALMQ13492 652 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 CCL14Q16627 93 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 C9orf50Q5SZB4 431 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 CCAR1Q8IX12 1150 aaKnown RBP7.27□□□□□ -1.25
VPS53-208ENST00000570650 ZGPATQ8N5A5 531 aaKnown RBP7.27□□□□□ -1.25
VPS53-208ENST00000570650 GPRC5AQ8NFJ5 357 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 USP6NLQ92738 828 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 POM121Q96HA1 1249 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 APBA2Q99767 749 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS53-208ENST00000570650 AS3MTQ9HBK9 375 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 DDX4Q9NQI0 724 aaKnown RBP7.27□□□□□ -1.25
VPS53-208ENST00000570650 TMPRSS4Q9NRS4 437 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 GNL3LQ9NVN8 582 aaKnown RBP7.27□□□□□ -1.25
VPS53-208ENST00000570650 COG6Q9Y2V7 657 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 EYSQ5T1H1 3165 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 FANCIQ9NVI1 1328 aa7.27□□□□□ -1.25
VPS53-208ENST00000570650 PRUNE2Q8WUY3 3088 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 FAM196BA6NMK8 535 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 USP17L5A8MUK1 530 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 DNM1LO00429 736 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 MSCO60682 206 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 SNRPBP14678 240 aaKnown RBP7.26□□□□□ -1.25
VPS53-208ENST00000570650 HOXA7P31268 230 aaPredicted RBP7.26□□□□□ -1.25
VPS53-208ENST00000570650 HERVK_113P62684 666 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 DDX10Q13206 875 aaKnown RBP7.26□□□□□ -1.25
VPS53-208ENST00000570650 MFSD14CQ5VZR4 134 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 MRPL14Q6P1L8 145 aaKnown RBP7.26□□□□□ -1.25
VPS53-208ENST00000570650 GPR142Q7Z601 462 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 ANKRD44Q8N8A2 993 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 USP38Q8NB14 1042 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 KLHDC4Q8TBB5 520 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 LPAR1Q92633 364 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 TXNRD2Q9NNW7 524 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 PRM3Q9NNZ6 103 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 TMOD4Q9NZQ9 345 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 DDX20Q9UHI6 824 aaKnown RBP7.26□□□□□ -1.25
VPS53-208ENST00000570650 DENND2AQ9ULE3 1009 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 ATP11BQ9Y2G3 1177 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 LTBP2Q14767 1821 aa7.26□□□□□ -1.25
VPS53-208ENST00000570650 MYH2Q9UKX2 1941 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 FRMPD3Q5JV73 1810 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 SPTBN5Q9NRC6 3674 aaKnown RBP7.25□□□□□ -1.25
VPS53-208ENST00000570650 ERVH48-1M5A8F1 160 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 EYA2O00167 538 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 PEX10O60683 326 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 CAP2P40123 477 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 BTDP43251 543 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 ERVK-9P63128 1117 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 ERVK-24P63145 666 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 EXOSC9Q06265 439 aaKnown RBP7.25□□□□□ -1.25
VPS53-208ENST00000570650 VAC14Q08AM6 782 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 CBLBQ13191 982 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 PLEKHH3Q7Z736 793 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 DZIP1Q86YF9 867 aaKnown RBP7.25□□□□□ -1.25
VPS53-208ENST00000570650 MEIOBQ8N635 442 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 GTF3C2Q8WUA4 911 aaPredicted RBP7.25□□□□□ -1.25
VPS53-208ENST00000570650 BADQ92934 168 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 P2RX7Q99572 595 aaKnown RBP7.25□□□□□ -1.25
VPS53-208ENST00000570650 PORCNQ9H237 461 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 CWC22Q9HCG8 908 aaKnown RBP7.25□□□□□ -1.25
VPS53-208ENST00000570650 PRDM5Q9NQX1 630 aaPredicted RBP7.25□□□□□ -1.25
VPS53-208ENST00000570650 RBPJLQ9UBG7 517 aa7.25□□□□□ -1.25
VPS53-208ENST00000570650 C19orf81C9J6K1 198 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 CNGA1P29973 690 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 PHKA1P46020 1223 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 BACE1P56817 501 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 DHX9Q08211 1270 aaKnown RBP7.24□□□□□ -1.25
VPS53-208ENST00000570650 MAP3K12Q12852 859 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 RRP1BQ14684 758 aaKnown RBP7.24□□□□□ -1.25
VPS53-208ENST00000570650 GRIN2CQ14957 1233 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 ATP2B3Q16720 1220 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 SLC39A5Q6ZMH5 540 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 ATXN2LQ8WWM7 1075 aaKnown RBP7.24□□□□□ -1.25
VPS53-208ENST00000570650 EDC3Q96F86 508 aaKnown RBP7.24□□□□□ -1.25
VPS53-208ENST00000570650 RNPC3Q96LT9 517 aaKnown RBP7.24□□□□□ -1.25
VPS53-208ENST00000570650 ZFP42Q96MM3 310 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 PURBQ96QR8 312 aaKnown RBP7.24□□□□□ -1.25
VPS53-208ENST00000570650 PAGR1Q9BTK6 254 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 WDR18Q9BV38 432 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 PRKRIP1Q9H875 184 aaPredicted RBP7.24□□□□□ -1.25
VPS53-208ENST00000570650 PGPEP1Q9NXJ5 209 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 MROH7-TTC4A0A0A0MT08 1334 aa7.24□□□□□ -1.25
VPS53-208ENST00000570650 ATAD5Q96QE3 1844 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 GPR75-ASB3A0A0A6YYF3 556 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 KBTBD13C9JR72 458 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 GLRX3O76003 335 aaKnown RBP7.23□□□□□ -1.25
VPS53-208ENST00000570650 MAP4K4O95819 1239 aaPredicted RBP7.23□□□□□ -1.25
VPS53-208ENST00000570650 ASNSP08243 561 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 RHBDL3P58872 404 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 SNX17Q15036 470 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 TRIM60Q495X7 471 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 C6orf118Q5T5N4 469 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 SPTY2D1Q68D10 685 aaPredicted RBP7.23□□□□□ -1.25
VPS53-208ENST00000570650 ARRDC4Q8NCT1 418 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 ADAMTS19Q8TE59 1207 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 ASB2Q96Q27 587 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 ZNF576Q9H609 170 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 SENP2Q9HC62 589 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms