RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 RRP12Q5JTH9 1297 aaKnown RBP23.99■■□□□ 1.43
CLK3-225ENST00000569063 KIFC2Q96AC6 838 aa23.99■■□□□ 1.43
CLK3-225ENST00000569063 DSCC1Q9BVC3 393 aa23.99■■□□□ 1.43
CLK3-225ENST00000569063 TEX13BQ9BXU2 312 aa23.99■■□□□ 1.43
CLK3-225ENST00000569063 SLC38A10Q9HBR0 1119 aa23.99■■□□□ 1.43
CLK3-225ENST00000569063 ZNF213O14771 459 aa23.98■■□□□ 1.43
CLK3-225ENST00000569063 SLC1A4P43007 532 aa23.98■■□□□ 1.43
CLK3-225ENST00000569063 TBC1D10CQ8IV04 446 aa23.98■■□□□ 1.43
CLK3-225ENST00000569063 MMP19Q99542 508 aa23.98■■□□□ 1.43
CLK3-225ENST00000569063 HTATIP2Q9BUP3 242 aa23.98■■□□□ 1.43
CLK3-225ENST00000569063 RNF41Q9H4P4 317 aaPredicted RBP23.98■■□□□ 1.43
CLK3-225ENST00000569063 TMEM232C9JQI7 657 aa23.97■■□□□ 1.43
CLK3-225ENST00000569063 PLA2G6O60733 806 aa23.97■■□□□ 1.43
CLK3-225ENST00000569063 FDX1P10109 184 aa23.97■■□□□ 1.43
CLK3-225ENST00000569063 MCCP23508 829 aa23.97■■□□□ 1.43
CLK3-225ENST00000569063 LHX8Q68G74 356 aa23.97■■□□□ 1.43
CLK3-225ENST00000569063 SNRNP48Q6IEG0 339 aaKnown RBP23.97■■□□□ 1.43
CLK3-225ENST00000569063 FAM160B2Q86V87 743 aa23.97■■□□□ 1.43
CLK3-225ENST00000569063 CHURC1Q8WUH1 139 aa23.97■■□□□ 1.43
CLK3-225ENST00000569063 CYP2C19P33261 490 aa23.96■■□□□ 1.43
CLK3-225ENST00000569063 NT5C2P49902 561 aa23.96■■□□□ 1.43
CLK3-225ENST00000569063 STAT2P52630 851 aa23.96■■□□□ 1.43
CLK3-225ENST00000569063 OAZ1P54368 228 aa23.96■■□□□ 1.43
CLK3-225ENST00000569063 RCSD1Q6JBY9 416 aa23.96■■□□□ 1.43
CLK3-225ENST00000569063 RIPK3Q9Y572 518 aa23.96■■□□□ 1.43
CLK3-225ENST00000569063 CTDP1Q9Y5B0 961 aaPredicted RBP23.96■■□□□ 1.43
CLK3-225ENST00000569063 MNX1P50219 401 aaPredicted RBP23.95■■□□□ 1.42
CLK3-225ENST00000569063 KCTD2Q14681 263 aa23.95■■□□□ 1.42
CLK3-225ENST00000569063 NECAB2Q7Z6G3 386 aa23.95■■□□□ 1.42
CLK3-225ENST00000569063 DPF3Q92784 378 aa23.95■■□□□ 1.42
CLK3-225ENST00000569063 PAWRQ96IZ0 340 aaKnown RBP23.95■■□□□ 1.42
CLK3-225ENST00000569063 MAML3Q96JK9 1138 aa23.95■■□□□ 1.42
CLK3-225ENST00000569063 TTC14Q96N46 770 aa23.95■■□□□ 1.42
CLK3-225ENST00000569063 IL25Q9H293 177 aa23.95■■□□□ 1.42
CLK3-225ENST00000569063 CTNNA3Q9UI47 895 aa23.95■■□□□ 1.42
CLK3-225ENST00000569063 DIS3Q9Y2L1 958 aaKnown RBP23.95■■□□□ 1.42
CLK3-225ENST00000569063 RAD50Q92878 1312 aa23.94■■□□□ 1.42
CLK3-225ENST00000569063 TOP1P11387 765 aaKnown RBP23.94■■□□□ 1.42
CLK3-225ENST00000569063 CYBAP13498 195 aa23.94■■□□□ 1.42
CLK3-225ENST00000569063 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.94■■□□□ 1.42
CLK3-225ENST00000569063 CPXCR1Q8N123 301 aa23.94■■□□□ 1.42
CLK3-225ENST00000569063 TRPV1Q8NER1 839 aa23.94■■□□□ 1.42
CLK3-225ENST00000569063 DIS3LQ8TF46 1054 aaKnown RBP23.94■■□□□ 1.42
CLK3-225ENST00000569063 ESR2Q92731 530 aa23.94■■□□□ 1.42
CLK3-225ENST00000569063 TMEM47Q9BQJ4 181 aa23.94■■□□□ 1.42
CLK3-225ENST00000569063 RAVER2Q9HCJ3 691 aaKnown RBP23.94■■□□□ 1.42
CLK3-225ENST00000569063 NEDD4P46934 1319 aa23.93■■□□□ 1.42
CLK3-225ENST00000569063 MSCO60682 206 aa23.93■■□□□ 1.42
CLK3-225ENST00000569063 PGK2P07205 417 aa23.93■■□□□ 1.42
CLK3-225ENST00000569063 IMMTQ16891 758 aaKnown RBP23.93■■□□□ 1.42
CLK3-225ENST00000569063 ZNF792Q3KQV3 632 aa23.93■■□□□ 1.42
CLK3-225ENST00000569063 KCTD1Q719H9 257 aa23.93■■□□□ 1.42
CLK3-225ENST00000569063 DCAF4Q8WV16 495 aa23.93■■□□□ 1.42
CLK3-225ENST00000569063 ISY1Q9ULR0 285 aaKnown RBP23.93■■□□□ 1.42
CLK3-225ENST00000569063 LAMA4Q16363 1823 aa23.92■■□□□ 1.42
CLK3-225ENST00000569063 CHMLP26374 656 aa23.92■■□□□ 1.42
CLK3-225ENST00000569063 RUFY2Q8WXA3 655 aa23.92■■□□□ 1.42
CLK3-225ENST00000569063 CHMP4CQ96CF2 233 aa23.92■■□□□ 1.42
CLK3-225ENST00000569063 DDX20Q9UHI6 824 aaKnown RBP23.92■■□□□ 1.42
CLK3-225ENST00000569063 ZNFX1Q9P2E3 1918 aaKnown RBP23.92■■□□□ 1.42
CLK3-225ENST00000569063 CNGA1P29973 690 aa23.91■■□□□ 1.42
CLK3-225ENST00000569063 IKQ13123 557 aaPredicted RBP23.91■■□□□ 1.42
CLK3-225ENST00000569063 CHST13Q8NET6 341 aa23.91■■□□□ 1.42
CLK3-225ENST00000569063 FBXO40Q9UH90 709 aa23.91■■□□□ 1.42
CLK3-225ENST00000569063 DNAJC25-GNG10A0A024R161 153 aa23.9■■□□□ 1.42
CLK3-225ENST00000569063 RASGRP2Q7LDG7 609 aa23.9■■□□□ 1.42
CLK3-225ENST00000569063 C11orf49Q9H6J7 331 aa23.9■■□□□ 1.42
CLK3-225ENST00000569063 NRBP1Q9UHY1 535 aa23.9■■□□□ 1.42
CLK3-225ENST00000569063 PRR12Q9ULL5 1215 aa23.9■■□□□ 1.42
CLK3-225ENST00000569063 ZNF536O15090 1300 aa23.89■■□□□ 1.42
CLK3-225ENST00000569063 H0YGN5 161 aa23.89■■□□□ 1.41
CLK3-225ENST00000569063 SLC4A3P48751 1232 aa23.89■■□□□ 1.41
CLK3-225ENST00000569063 BTNL9Q6UXG8 535 aa23.89■■□□□ 1.41
CLK3-225ENST00000569063 DGKHQ86XP1 1220 aa23.89■■□□□ 1.41
CLK3-225ENST00000569063 DDX11Q96FC9 970 aa23.89■■□□□ 1.41
CLK3-225ENST00000569063 TINF2Q9BSI4 451 aa23.89■■□□□ 1.41
CLK3-225ENST00000569063 MTMR7Q9Y216 660 aa23.89■■□□□ 1.41
CLK3-225ENST00000569063 SEPT4O43236 478 aa23.88■■□□□ 1.41
CLK3-225ENST00000569063 KDM4AO75164 1064 aa23.88■■□□□ 1.41
CLK3-225ENST00000569063 CCDC96Q2M329 555 aa23.88■■□□□ 1.41
CLK3-225ENST00000569063 CCDC178Q5BJE1 867 aa23.88■■□□□ 1.41
CLK3-225ENST00000569063 IQCA1Q86XH1 822 aa23.88■■□□□ 1.41
CLK3-225ENST00000569063 MSL3Q8N5Y2 521 aaKnown RBP23.88■■□□□ 1.41
CLK3-225ENST00000569063 NR2E3Q9Y5X4 410 aa23.88■■□□□ 1.41
CLK3-225ENST00000569063 B4E1Z4 1266 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 PDHBP11177 359 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 COL6A1P12109 1028 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 PRAMEF19Q5SWL8 479 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 CENPQQ7L2Z9 268 aaPredicted RBP23.87■■□□□ 1.41
CLK3-225ENST00000569063 ANKS1AQ92625 1134 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 AGBL1Q96MI9 1066 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 ZKSCAN3Q9BRR0 538 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 KRT23Q9C075 422 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 CNNM2Q9H8M5 875 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 ZSWIM5Q9P217 1185 aa23.87■■□□□ 1.41
CLK3-225ENST00000569063 PLXNA1Q9UIW2 1896 aa23.86■■□□□ 1.41
CLK3-225ENST00000569063 EVI5O60447 810 aa23.86■■□□□ 1.41
CLK3-225ENST00000569063 SNHG28P0DPA3 235 aa23.86■■□□□ 1.41
CLK3-225ENST00000569063 TKFCQ3LXA3 575 aa23.86■■□□□ 1.41
CLK3-225ENST00000569063 TTBK2Q6IQ55 1244 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms