RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-209ENST00000567635 HIP1O00291 1037 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 EVI5O60447 810 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 COBLO75128 1261 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 IGHA2P01877 340 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 FGRP09769 529 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 CNGA1P29973 690 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 CYP2C19P33261 490 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 COPB2P35606 906 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 IRX6P78412 446 aaPredicted RBP8.19□□□□□ -1.1
SF3B3-209ENST00000567635 LHX8Q68G74 356 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 ZNF589Q86UQ0 364 aaPredicted RBP8.19□□□□□ -1.1
SF3B3-209ENST00000567635 LRRC47Q8N1G4 583 aaKnown RBP8.19□□□□□ -1.1
SF3B3-209ENST00000567635 CHURC1Q8WUH1 139 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 KIFC2Q96AC6 838 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 MMP19Q99542 508 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 NBPF3Q9H094 633 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 IL17RBQ9NRM6 502 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 DIAPH3Q9NSV4 1193 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 ZNF214Q9UL59 606 aaPredicted RBP8.19□□□□□ -1.1
SF3B3-209ENST00000567635 TACC3Q9Y6A5 838 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 CCDC171Q6TFL3 1326 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 PLIN4Q96Q06 1357 aa8.19□□□□□ -1.1
SF3B3-209ENST00000567635 TMEM232C9JQI7 657 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 ATP2A1O14983 1001 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 NMT2O60551 498 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 MSCO60682 206 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 FDX1P10109 184 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 PCP11498 1178 aaKnown RBP8.18□□□□□ -1.1
SF3B3-209ENST00000567635 BMP3P12645 472 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 MCCP23508 829 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 SLC1A4P43007 532 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 KCTD2Q14681 263 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 RRP12Q5JTH9 1297 aaKnown RBP8.18□□□□□ -1.1
SF3B3-209ENST00000567635 RCSD1Q6JBY9 416 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 CWC27Q6UX04 472 aaKnown RBP8.18□□□□□ -1.1
SF3B3-209ENST00000567635 MFSD6Q6ZSS7 791 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 CPXCR1Q8N123 301 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 REPS2Q8NFH8 660 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 DIS3LQ8TF46 1054 aaKnown RBP8.18□□□□□ -1.1
SF3B3-209ENST00000567635 STAG1Q8WVM7 1258 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 GMCL1Q96IK5 515 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 TEX13BQ9BXU2 312 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 C11orf49Q9H6J7 331 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 TOMM22Q9NS69 142 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 STX8Q9UNK0 236 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 ZMYM6O95789 1325 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 BRCA2P51587 3418 aa8.18□□□□□ -1.1
SF3B3-209ENST00000567635 BAZ2BQ9UIF8 2168 aaKnown RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 ZNF213O14771 459 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 PLA2G6O60733 806 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 PGK2P07205 417 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 CYBAP13498 195 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 NOVP48745 357 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 SLC4A3P48751 1232 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 MNX1P50219 401 aaPredicted RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 STAT2P52630 851 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 HAND2P61296 217 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 IKQ13123 557 aaPredicted RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 ZNF792Q3KQV3 632 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 HABP4Q5JVS0 413 aaKnown RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 PRAMEF19Q5SWL8 479 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 AKNAD1Q5T1N1 836 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 SNRNP48Q6IEG0 339 aaKnown RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 FAM160B2Q86V87 743 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 TRPV1Q8NER1 839 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 CHMP4CQ96CF2 233 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 DDX11Q96FC9 970 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 MAML3Q96JK9 1138 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 SLC38A10Q9HBR0 1119 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 RAVER2Q9HCJ3 691 aaKnown RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 TCP11L1Q9NUJ3 509 aa8.17□□□□□ -1.1
SF3B3-209ENST00000567635 DDX20Q9UHI6 824 aaKnown RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 ISY1Q9ULR0 285 aaKnown RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 COLQQ9Y215 455 aaPredicted RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 DIS3Q9Y2L1 958 aaKnown RBP8.17□□□□□ -1.1
SF3B3-209ENST00000567635 TOP1P11387 765 aaKnown RBP8.16□□□□□ -1.1
SF3B3-209ENST00000567635 PDE4AP27815 886 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 OAZ1P54368 228 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 LAMA4Q16363 1823 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 TTC22Q5TAA0 569 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 KCTD1Q719H9 257 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 ARRDC4Q8NCT1 418 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 CHST13Q8NET6 341 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 DCAF4Q8WV16 495 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 TTC14Q96N46 770 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 RNF41Q9H4P4 317 aaPredicted RBP8.16□□□□□ -1.1
SF3B3-209ENST00000567635 FBXO40Q9UH90 709 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 NRBP1Q9UHY1 535 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 CTNNA3Q9UI47 895 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 RIPK3Q9Y572 518 aa8.16□□□□□ -1.1
SF3B3-209ENST00000567635 DNAJC25-GNG10A0A024R161 153 aa8.15□□□□□ -1.1
SF3B3-209ENST00000567635 SEPT4O43236 478 aa8.15□□□□□ -1.1
SF3B3-209ENST00000567635 COL6A1P12109 1028 aa8.15□□□□□ -1.1
SF3B3-209ENST00000567635 NT5C2P49902 561 aa8.15□□□□□ -1.1
SF3B3-209ENST00000567635 TKFCQ3LXA3 575 aa8.15□□□□□ -1.1
SF3B3-209ENST00000567635 CCDC178Q5BJE1 867 aa8.15□□□□□ -1.1
SF3B3-209ENST00000567635 ANKRD35Q8N283 1001 aa8.15□□□□□ -1.1
SF3B3-209ENST00000567635 MSL3Q8N5Y2 521 aaKnown RBP8.15□□□□□ -1.1
SF3B3-209ENST00000567635 RUFY2Q8WXA3 655 aa8.15□□□□□ -1.1
SF3B3-209ENST00000567635 ESR2Q92731 530 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms