RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ZNF214Q9UL59 606 aaPredicted RBP22.89■■□□□ 1.26
CLN3-225ENST00000566824 TAL1P17542 331 aaPredicted RBP22.88■■□□□ 1.25
CLN3-225ENST00000566824 PLS1Q14651 629 aa22.88■■□□□ 1.25
CLN3-225ENST00000566824 KIF22Q14807 665 aa22.88■■□□□ 1.25
CLN3-225ENST00000566824 BTNL9Q6UXG8 535 aa22.88■■□□□ 1.25
CLN3-225ENST00000566824 RAB11FIP4Q86YS3 637 aa22.88■■□□□ 1.25
CLN3-225ENST00000566824 SPATC1LQ9H0A9 340 aa22.88■■□□□ 1.25
CLN3-225ENST00000566824 SLC38A10Q9HBR0 1119 aa22.88■■□□□ 1.25
CLN3-225ENST00000566824 GABRQQ9UN88 632 aa22.88■■□□□ 1.25
CLN3-225ENST00000566824 BAZ2BQ9UIF8 2168 aaKnown RBP22.88■■□□□ 1.25
CLN3-225ENST00000566824 PLA2G6O60733 806 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 CASTP20810 708 aaKnown RBP22.87■■□□□ 1.25
CLN3-225ENST00000566824 FCGRTP55899 365 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 TROAPQ12815 778 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 SLC35G1Q2M3R5 365 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 FAM160B2Q86V87 743 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 MB21D1Q8N884 522 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 CHURC1Q8WUH1 139 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 MTA3Q9BTC8 594 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 MCOLN1Q9GZU1 580 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 RAVER2Q9HCJ3 691 aaKnown RBP22.87■■□□□ 1.25
CLN3-225ENST00000566824 MAD2L2Q9UI95 211 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 WDR19Q8NEZ3 1342 aa22.87■■□□□ 1.25
CLN3-225ENST00000566824 RPS6KB1P23443 525 aa22.86■■□□□ 1.25
CLN3-225ENST00000566824 SYDE2Q5VT97 1194 aa22.86■■□□□ 1.25
CLN3-225ENST00000566824 BLOC1S2Q6QNY1 142 aa22.86■■□□□ 1.25
CLN3-225ENST00000566824 ZNF654Q8IZM8 581 aa22.86■■□□□ 1.25
CLN3-225ENST00000566824 BRPF3Q9ULD4 1205 aa22.86■■□□□ 1.25
CLN3-225ENST00000566824 RIPK3Q9Y572 518 aa22.86■■□□□ 1.25
CLN3-225ENST00000566824 ZNF536O15090 1300 aa22.86■■□□□ 1.25
CLN3-225ENST00000566824 ZNFX1Q9P2E3 1918 aaKnown RBP22.86■■□□□ 1.25
CLN3-225ENST00000566824 TNPO2O14787 897 aaKnown RBP22.85■■□□□ 1.25
CLN3-225ENST00000566824 RXRAP19793 462 aa22.85■■□□□ 1.25
CLN3-225ENST00000566824 LIFRP42702 1097 aa22.85■■□□□ 1.25
CLN3-225ENST00000566824 PRKCZQ05513 592 aa22.85■■□□□ 1.25
CLN3-225ENST00000566824 GRM4Q14833 912 aa22.85■■□□□ 1.25
CLN3-225ENST00000566824 CPXCR1Q8N123 301 aa22.85■■□□□ 1.25
CLN3-225ENST00000566824 UPF3BQ9BZI7 483 aaKnown RBP22.85■■□□□ 1.25
CLN3-225ENST00000566824 ZSWIM6Q9HCJ5 1215 aa22.85■■□□□ 1.25
CLN3-225ENST00000566824 HTTP42858 3142 aa22.85■■□□□ 1.25
CLN3-225ENST00000566824 PALM3A6NDB9 673 aaPredicted RBP22.84■■□□□ 1.25
CLN3-225ENST00000566824 ZBED4O75132 1171 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 PARP1P09874 1014 aaKnown RBP22.84■■□□□ 1.25
CLN3-225ENST00000566824 ERCC3P19447 782 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 STAT3P40763 770 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 CCDC174Q6PII3 467 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 NFXL1Q6ZNB6 911 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 Q6ZUG5 572 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 GPR142Q7Z601 462 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 AGBL1Q96MI9 1066 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 SRRDQ9UH36 339 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 GJD2Q9UKL4 321 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 PTPN22Q9Y2R2 807 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 MYH6P13533 1939 aa22.84■■□□□ 1.25
CLN3-225ENST00000566824 HMGB1P09429 215 aaKnown RBP22.83■■□□□ 1.25
CLN3-225ENST00000566824 SLC4A3P48751 1232 aa22.83■■□□□ 1.25
CLN3-225ENST00000566824 ASPRV1Q53RT3 343 aa22.83■■□□□ 1.25
CLN3-225ENST00000566824 GPATCH4Q5T3I0 446 aaKnown RBP22.83■■□□□ 1.25
CLN3-225ENST00000566824 WDR78Q5VTH9 848 aa22.83■■□□□ 1.25
CLN3-225ENST00000566824 SNRNP48Q6IEG0 339 aaKnown RBP22.83■■□□□ 1.25
CLN3-225ENST00000566824 CATIPQ7Z7H3 387 aa22.83■■□□□ 1.25
CLN3-225ENST00000566824 NBPF11Q86T75 865 aa22.83■■□□□ 1.25
CLN3-225ENST00000566824 SGMS1Q86VZ5 419 aa22.83■■□□□ 1.25
CLN3-225ENST00000566824 NUP133Q8WUM0 1156 aa22.83■■□□□ 1.25
CLN3-225ENST00000566824 PTCH2Q9Y6C5 1203 aa22.83■■□□□ 1.25
CLN3-225ENST00000566824 CCDC69A6NI79 296 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 PSMA5P28066 241 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 MAPK4P31152 587 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 CCNA1P78396 465 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 RUFY3Q7L099 469 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 PLEKHH3Q7Z736 793 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 NCAPG2Q86XI2 1143 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 RIOX2Q8IUF8 465 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 CCDC144CPQ8IYA2 1237 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 ADGRF4Q8IZF3 695 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 TM6SF1Q9BZW5 370 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 RANBP17Q9H2T7 1088 aaKnown RBP22.82■■□□□ 1.24
CLN3-225ENST00000566824 KLRF2D3W0D1 207 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 ATP2A1O14983 1001 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 FLT3LGP49771 235 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 APOBRQ0VD83 1088 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 TMTC2Q8N394 836 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 SHCBP1Q8NEM2 672 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 TEX13BQ9BXU2 312 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 VAT1LQ9HCJ6 419 aa22.82■■□□□ 1.24
CLN3-225ENST00000566824 DDAH1O94760 285 aa22.81■■□□□ 1.24
CLN3-225ENST00000566824 TOB2Q14106 344 aaPredicted RBP22.81■■□□□ 1.24
CLN3-225ENST00000566824 MORN1Q5T089 497 aa22.81■■□□□ 1.24
CLN3-225ENST00000566824 APOA5Q6Q788 366 aa22.81■■□□□ 1.24
CLN3-225ENST00000566824 USP6NLQ92738 828 aa22.81■■□□□ 1.24
CLN3-225ENST00000566824 BRF1Q92994 677 aa22.81■■□□□ 1.24
CLN3-225ENST00000566824 COA7Q96BR5 231 aa22.81■■□□□ 1.24
CLN3-225ENST00000566824 IL17RAQ96F46 866 aa22.81■■□□□ 1.24
CLN3-225ENST00000566824 LARP6Q9BRS8 491 aaKnown RBP22.81■■□□□ 1.24
CLN3-225ENST00000566824 JMJD4Q9H9V9 463 aa22.81■■□□□ 1.24
CLN3-225ENST00000566824 KLF18A0A0U1RQI7 1052 aa22.8■■□□□ 1.24
CLN3-225ENST00000566824 CYTH3O43739 400 aa22.8■■□□□ 1.24
CLN3-225ENST00000566824 GNRH1P01148 92 aa22.8■■□□□ 1.24
CLN3-225ENST00000566824 PTPREP23469 700 aa22.8■■□□□ 1.24
CLN3-225ENST00000566824 ANAPC15P60006 121 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms