RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 MICALL1Q8N3F8 863 aa20.39■□□□□ 0.85
CDH3-205ENST00000566808 SWAP70Q9UH65 585 aa20.39■□□□□ 0.85
CDH3-205ENST00000566808 BRWD1Q9NSI6 2320 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 ARVCFO00192 962 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 ERC2O15083 957 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 ASGR1P07306 291 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 C6orf222P0C671 652 aaPredicted RBP20.38■□□□□ 0.85
CDH3-205ENST00000566808 KCNQ1P51787 676 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 PPP2R2DQ66LE6 453 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 CLEC10AQ8IUN9 316 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 TRMT2AQ8IZ69 625 aaKnown RBP20.38■□□□□ 0.85
CDH3-205ENST00000566808 CRNKL1Q9BZJ0 848 aaKnown RBP20.38■□□□□ 0.85
CDH3-205ENST00000566808 SPC25Q9HBM1 224 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 MCM9Q9NXL9 1143 aa20.38■□□□□ 0.85
CDH3-205ENST00000566808 ZHX1Q9UKY1 873 aaPredicted RBP20.38■□□□□ 0.85
CDH3-205ENST00000566808 ZNF214Q9UL59 606 aaPredicted RBP20.38■□□□□ 0.85
CDH3-205ENST00000566808 BAZ2AQ9UIF9 1905 aaKnown RBP20.37■□□□□ 0.85
CDH3-205ENST00000566808 STAT3P40763 770 aa20.37■□□□□ 0.85
CDH3-205ENST00000566808 EVX2Q03828 476 aa20.37■□□□□ 0.85
CDH3-205ENST00000566808 POLA2Q14181 598 aa20.37■□□□□ 0.85
CDH3-205ENST00000566808 TMEM31Q5JXX7 168 aa20.37■□□□□ 0.85
CDH3-205ENST00000566808 MAMDC4Q6UXC1 1216 aa20.37■□□□□ 0.85
CDH3-205ENST00000566808 UPF3AQ9H1J1 476 aaKnown RBP20.37■□□□□ 0.85
CDH3-205ENST00000566808 TLR7Q9NYK1 1049 aaKnown RBP20.37■□□□□ 0.85
CDH3-205ENST00000566808 MAGEB6P1A0A0J9YX57 407 aa20.36■□□□□ 0.85
CDH3-205ENST00000566808 VWA5AO00534 786 aa20.36■□□□□ 0.85
CDH3-205ENST00000566808 CYP2C18P33260 490 aa20.36■□□□□ 0.85
CDH3-205ENST00000566808 SIAH1Q8IUQ4 282 aa20.36■□□□□ 0.85
CDH3-205ENST00000566808 VTI1AQ96AJ9 217 aa20.36■□□□□ 0.85
CDH3-205ENST00000566808 FBXO28Q9NVF7 368 aa20.36■□□□□ 0.85
CDH3-205ENST00000566808 PPP1R9AQ9ULJ8 1098 aa20.36■□□□□ 0.85
CDH3-205ENST00000566808 SNAI1O95863 264 aaPredicted RBP20.35■□□□□ 0.85
CDH3-205ENST00000566808 CD4P01730 458 aa20.35■□□□□ 0.85
CDH3-205ENST00000566808 FGBP02675 491 aa20.35■□□□□ 0.85
CDH3-205ENST00000566808 GJA9P57773 515 aa20.35■□□□□ 0.85
CDH3-205ENST00000566808 SKIV2LQ15477 1246 aaKnown RBP20.35■□□□□ 0.85
CDH3-205ENST00000566808 ZNF467Q7Z7K2 595 aaPredicted RBP20.35■□□□□ 0.85
CDH3-205ENST00000566808 EPHX3Q9H6B9 360 aa20.35■□□□□ 0.85
CDH3-205ENST00000566808 ANTXR1Q9H6X2 564 aa20.35■□□□□ 0.85
CDH3-205ENST00000566808 PCDHA11Q9Y5I1 949 aa20.35■□□□□ 0.85
CDH3-205ENST00000566808 AKR1B1P15121 316 aa20.34■□□□□ 0.85
CDH3-205ENST00000566808 RARSP54136 660 aaKnown RBP20.34■□□□□ 0.85
CDH3-205ENST00000566808 OTOP2Q7RTS6 562 aa20.34■□□□□ 0.85
CDH3-205ENST00000566808 REPS2Q8NFH8 660 aa20.34■□□□□ 0.85
CDH3-205ENST00000566808 SSH3Q8TE77 659 aa20.34■□□□□ 0.85
CDH3-205ENST00000566808 TEX13BQ9BXU2 312 aa20.34■□□□□ 0.85
CDH3-205ENST00000566808 HIPK3Q9H422 1215 aa20.34■□□□□ 0.85
CDH3-205ENST00000566808 DNAJC25-GNG10A0A024R161 153 aa20.33■□□□□ 0.85
CDH3-205ENST00000566808 ADCY6O43306 1168 aa20.33■□□□□ 0.85
CDH3-205ENST00000566808 IRX5P78411 483 aaPredicted RBP20.33■□□□□ 0.85
CDH3-205ENST00000566808 CCDC17Q96LX7 622 aa20.33■□□□□ 0.85
CDH3-205ENST00000566808 DCP1AQ9NPI6 582 aaPredicted RBP20.33■□□□□ 0.85
CDH3-205ENST00000566808 GREB1LQ9C091 1923 aaPredicted RBP20.33■□□□□ 0.84
CDH3-205ENST00000566808 GTPBP6O43824 516 aaPredicted RBP20.32■□□□□ 0.84
CDH3-205ENST00000566808 SURF6O75683 361 aaKnown RBP20.32■□□□□ 0.84
CDH3-205ENST00000566808 POU3F3P20264 500 aaPredicted RBP20.32■□□□□ 0.84
CDH3-205ENST00000566808 RABGGTBP53611 331 aa20.32■□□□□ 0.84
CDH3-205ENST00000566808 ACVR2BQ13705 512 aa20.32■□□□□ 0.84
CDH3-205ENST00000566808 GNASQ5JWF2 1037 aa20.32■□□□□ 0.84
CDH3-205ENST00000566808 DDX11Q96FC9 970 aa20.32■□□□□ 0.84
CDH3-205ENST00000566808 CCDC8Q9H0W5 538 aaPredicted RBP20.32■□□□□ 0.84
CDH3-205ENST00000566808 ABHD16BQ9H3Z7 469 aa20.32■□□□□ 0.84
CDH3-205ENST00000566808 GOPCQ9HD26 462 aa20.32■□□□□ 0.84
CDH3-205ENST00000566808 COG5Q9UP83 839 aa20.32■□□□□ 0.84
CDH3-205ENST00000566808 SLC4A7Q9Y6M7 1214 aa20.32■□□□□ 0.84
CDH3-205ENST00000566808 CYP2D6P10635 497 aa20.31■□□□□ 0.84
CDH3-205ENST00000566808 TRIM27P14373 513 aa20.31■□□□□ 0.84
CDH3-205ENST00000566808 CCDC144BQ3MJ40 725 aa20.31■□□□□ 0.84
CDH3-205ENST00000566808 SDR42E1Q8WUS8 393 aa20.31■□□□□ 0.84
CDH3-205ENST00000566808 EAF2Q96CJ1 260 aaPredicted RBP20.31■□□□□ 0.84
CDH3-205ENST00000566808 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.31■□□□□ 0.84
CDH3-205ENST00000566808 MTCH2Q9Y6C9 303 aa20.31■□□□□ 0.84
CDH3-205ENST00000566808 UMODL1Q5DID0 1318 aa20.3■□□□□ 0.84
CDH3-205ENST00000566808 COL4A4P53420 1690 aaPredicted RBP20.3■□□□□ 0.84
CDH3-205ENST00000566808 IPO8O15397 1037 aaKnown RBP20.3■□□□□ 0.84
CDH3-205ENST00000566808 GPR37L1O60883 481 aa20.3■□□□□ 0.84
CDH3-205ENST00000566808 PDE6AP16499 860 aa20.3■□□□□ 0.84
CDH3-205ENST00000566808 NKX3-2P78367 333 aa20.3■□□□□ 0.84
CDH3-205ENST00000566808 SNRNP48Q6IEG0 339 aaKnown RBP20.3■□□□□ 0.84
CDH3-205ENST00000566808 SLC43A3Q8NBI5 491 aa20.3■□□□□ 0.84
CDH3-205ENST00000566808 DYNLL2Q96FJ2 89 aa20.3■□□□□ 0.84
CDH3-205ENST00000566808 NOP58Q9Y2X3 529 aaKnown RBP20.3■□□□□ 0.84
CDH3-205ENST00000566808 EEF2P13639 858 aaKnown RBP20.29■□□□□ 0.84
CDH3-205ENST00000566808 MYOGP15173 224 aa20.29■□□□□ 0.84
CDH3-205ENST00000566808 TTF1Q15361 905 aaPredicted RBP20.29■□□□□ 0.84
CDH3-205ENST00000566808 FAM83BQ5T0W9 1011 aa20.29■□□□□ 0.84
CDH3-205ENST00000566808 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.29■□□□□ 0.84
CDH3-205ENST00000566808 NOC4LQ9BVI4 516 aaKnown RBP20.29■□□□□ 0.84
CDH3-205ENST00000566808 SEZ6LQ9BYH1 1024 aa20.29■□□□□ 0.84
CDH3-205ENST00000566808 KANSL2Q9H9L4 492 aa20.29■□□□□ 0.84
CDH3-205ENST00000566808 CTAGE5O15320 804 aa20.28■□□□□ 0.84
CDH3-205ENST00000566808 CABYRO75952 493 aa20.28■□□□□ 0.84
CDH3-205ENST00000566808 ATP2A2P16615 1042 aaKnown RBP20.28■□□□□ 0.84
CDH3-205ENST00000566808 SLC9C2Q5TAH2 1124 aa20.28■□□□□ 0.84
CDH3-205ENST00000566808 RPUSD2Q8IZ73 545 aaKnown RBP20.28■□□□□ 0.84
CDH3-205ENST00000566808 LCORLQ8N3X6 602 aa20.28■□□□□ 0.84
CDH3-205ENST00000566808 SLF1Q9BQI6 1058 aa20.28■□□□□ 0.84
CDH3-205ENST00000566808 WNT8AQ9H1J5 351 aa20.28■□□□□ 0.84
CDH3-205ENST00000566808 C11orf16Q9NQ32 467 aa20.28■□□□□ 0.84
CDH3-205ENST00000566808 TANC1Q9C0D5 1861 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms