RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TEX35Q5T0J7 233 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 TRMT44Q8IYL2 757 aaKnown RBP15□□□□□ -0.01
VPS4A-204ENST00000566354 FANCBQ8NB91 859 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 RABGGTAQ92696 567 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 MED15Q96RN5 788 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 SPON1Q9HCB6 807 aa15□□□□□ -0.01
VPS4A-204ENST00000566354 SAMSN1Q9NSI8 373 aaKnown RBP15□□□□□ -0.01
VPS4A-204ENST00000566354 MYH2Q9UKX2 1941 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 AKR1B15C9JRZ8 316 aaPredicted RBP14.99□□□□□ -0.01
VPS4A-204ENST00000566354 PPIP5K2O43314 1243 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 ECE2O60344 883 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 CCDC175P0C221 793 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 NR5A1Q13285 461 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 PPP2R5BQ15173 497 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 RRP12Q5JTH9 1297 aaKnown RBP14.99□□□□□ -0.01
VPS4A-204ENST00000566354 RTKN2Q8IZC4 609 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 CERS5Q8N5B7 392 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 NAA15Q9BXJ9 866 aaKnown RBP14.99□□□□□ -0.01
VPS4A-204ENST00000566354 RNF41Q9H4P4 317 aaPredicted RBP14.99□□□□□ -0.01
VPS4A-204ENST00000566354 TOMM22Q9NS69 142 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 AATFQ9NY61 560 aaKnown RBP eCLIP14.99□□□□□ -0.01
VPS4A-204ENST00000566354 TDO2P48775 406 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 CC2D1AQ6P1N0 951 aaPredicted RBP14.99□□□□□ -0.01
VPS4A-204ENST00000566354 PODNQ7Z5L7 613 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 GRAMD1CQ8IYS0 662 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 SUPT20HQ8NEM7 779 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 TBC1D22AQ8WUA7 517 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 SDR42E1Q8WUS8 393 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 UBXN6Q9BZV1 441 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 CSRNP2Q9H175 543 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 ZNF277Q9NRM2 450 aaPredicted RBP14.99□□□□□ -0.01
VPS4A-204ENST00000566354 SLC4A4Q9Y6R1 1079 aa14.99□□□□□ -0.01
VPS4A-204ENST00000566354 SPATA1Q5VX52 437 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 JAKMIP3Q5VZ66 844 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 CCDC82Q8N4S0 544 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 PSMD1Q99460 953 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 ZKSCAN3Q9BRR0 538 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 CABP5Q9NP86 173 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 CALCOCO1Q9P1Z2 691 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 BCS1LQ9Y276 419 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 XBP1P17861 261 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 ZNF654Q8IZM8 581 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 GOLGA1Q92805 767 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 ARFGAP3Q9NP61 516 aa14.98□□□□□ -0.01
VPS4A-204ENST00000566354 TRIM75PA6NK02 468 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 VGLL3A8MV65 326 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 F8W031 263 aaPredicted RBP14.97□□□□□ -0.01
VPS4A-204ENST00000566354 SEC31AO94979 1220 aaKnown RBP14.97□□□□□ -0.01
VPS4A-204ENST00000566354 TBC1D8O95759 1140 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 ATP2B1P20020 1258 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 USP49Q70CQ1 688 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 PPFIBP1Q86W92 1011 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 OXER1Q8TDS5 423 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 CTAGE1Q96RT6 745 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 RNF26Q9BY78 433 aaPredicted RBP14.97□□□□□ -0.01
VPS4A-204ENST00000566354 PARD6BQ9BYG5 372 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 COL4A5P29400 1685 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 APTXQ7Z2E3 356 aaKnown RBP14.97□□□□□ -0.01
VPS4A-204ENST00000566354 CCDC12Q8WUD4 166 aaPredicted RBP14.97□□□□□ -0.01
VPS4A-204ENST00000566354 NUP133Q8WUM0 1156 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 UBAC1Q9BSL1 405 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 DESI2Q9BSY9 194 aa14.97□□□□□ -0.01
VPS4A-204ENST00000566354 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.97□□□□□ -0.01
VPS4A-204ENST00000566354 BAZ2AQ9UIF9 1905 aaKnown RBP14.96□□□□□ -0.01
VPS4A-204ENST00000566354 ERICH4A6NGS2 130 aa14.96□□□□□ -0.01
VPS4A-204ENST00000566354 YDJCA8MPS7 323 aa14.96□□□□□ -0.01
VPS4A-204ENST00000566354 BMP15O95972 392 aa14.96□□□□□ -0.01
VPS4A-204ENST00000566354 AKAP17AQ02040 695 aaKnown RBP14.96□□□□□ -0.01
VPS4A-204ENST00000566354 CMTR1Q8N1G2 835 aaKnown RBP14.96□□□□□ -0.01
VPS4A-204ENST00000566354 DHX58Q96C10 678 aa14.96□□□□□ -0.01
VPS4A-204ENST00000566354 GSDMAQ96QA5 445 aa14.96□□□□□ -0.01
VPS4A-204ENST00000566354 EPC1Q9H2F5 836 aa14.96□□□□□ -0.01
VPS4A-204ENST00000566354 ADGRG1Q9Y653 693 aa14.96□□□□□ -0.01
VPS4A-204ENST00000566354 FER1L6Q2WGJ9 1857 aa14.96□□□□□ -0.02
VPS4A-204ENST00000566354 TEX33O43247 280 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 CLSTN1O94985 981 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 TXLNAP40222 546 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 KARSQ15046 597 aaKnown RBP14.95□□□□□ -0.02
VPS4A-204ENST00000566354 SOGA3Q5TF21 947 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 SH3RF1Q7Z6J0 888 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 LARGE2Q8N3Y3 721 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 IGSF22Q8N9C0 903 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 FERMT2Q96AC1 680 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 MRPL44Q9H9J2 332 aaKnown RBP14.95□□□□□ -0.02
VPS4A-204ENST00000566354 ADD3Q9UEY8 706 aaKnown RBP14.95□□□□□ -0.02
VPS4A-204ENST00000566354 KCNG1Q9UIX4 513 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 ZNF646O15015 1829 aaPredicted RBP14.95□□□□□ -0.02
VPS4A-204ENST00000566354 SYNRGQ9UMZ2 1314 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 SOWAHDA6NJG2 315 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 SASH3O75995 380 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 PBX1P40424 430 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 TUBB4BP68371 445 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 GSTO1P78417 241 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 RBL2Q08999 1139 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 CUL4BQ13620 913 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 TUBB2AQ13885 445 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 FILIP1LQ4L180 1135 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 CDKAL1Q5VV42 579 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 PAGE5Q96GU1 130 aa14.95□□□□□ -0.02
VPS4A-204ENST00000566354 TUBB2BQ9BVA1 445 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms