RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 NEDD1Q8NHV4 660 aa22.28■■□□□ 1.16
CLN3-218ENST00000565688 MYCNP04198 464 aaPredicted RBP22.27■■□□□ 1.16
CLN3-218ENST00000565688 MDM2Q00987 491 aaPredicted RBP22.27■■□□□ 1.16
CLN3-218ENST00000565688 PPARAQ07869 468 aa22.27■■□□□ 1.16
CLN3-218ENST00000565688 LRRC41Q15345 812 aa22.27■■□□□ 1.16
CLN3-218ENST00000565688 PPP4R3BQ5MIZ7 849 aa22.27■■□□□ 1.16
CLN3-218ENST00000565688 SLC39A5Q6ZMH5 540 aa22.27■■□□□ 1.16
CLN3-218ENST00000565688 CNPY2Q9Y2B0 182 aa22.27■■□□□ 1.16
CLN3-218ENST00000565688 MYH4Q9Y623 1939 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 FAM47AQ5JRC9 791 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 ANKRD45Q5TZF3 282 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 KIFC2Q96AC6 838 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 DDX11Q96FC9 970 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 SLC38A10Q9HBR0 1119 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 XPNPEP3Q9NQH7 507 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 ATP11BQ9Y2G3 1177 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 SALL3Q9BXA9 1300 aa22.26■■□□□ 1.15
CLN3-218ENST00000565688 FDX1P10109 184 aa22.25■■□□□ 1.15
CLN3-218ENST00000565688 ADCYAP1R1P41586 468 aa22.25■■□□□ 1.15
CLN3-218ENST00000565688 OAZ1P54368 228 aa22.25■■□□□ 1.15
CLN3-218ENST00000565688 TFAP4Q01664 338 aa22.25■■□□□ 1.15
CLN3-218ENST00000565688 SNX17Q15036 470 aa22.25■■□□□ 1.15
CLN3-218ENST00000565688 RNF180Q86T96 592 aa22.25■■□□□ 1.15
CLN3-218ENST00000565688 LRRC47Q8N1G4 583 aaKnown RBP22.25■■□□□ 1.15
CLN3-218ENST00000565688 FBXO40Q9UH90 709 aa22.25■■□□□ 1.15
CLN3-218ENST00000565688 PLXNA1Q9UIW2 1896 aa22.25■■□□□ 1.15
CLN3-218ENST00000565688 BMP3P12645 472 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 AKR1A1P14550 325 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 C1orf53Q5VUE5 145 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 SLFN13Q68D06 897 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.24■■□□□ 1.15
CLN3-218ENST00000565688 CPXCR1Q8N123 301 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 EVI5LQ96CN4 794 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 PHF24Q9UPV7 400 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 RIPK3Q9Y572 518 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 SYNGAP1Q96PV0 1343 aa22.24■■□□□ 1.15
CLN3-218ENST00000565688 DNAJC25-GNG10A0A024R161 153 aa22.23■■□□□ 1.15
CLN3-218ENST00000565688 ZNF865P0CJ78 1059 aaPredicted RBP22.23■■□□□ 1.15
CLN3-218ENST00000565688 HDAC1Q13547 482 aaPredicted RBP22.23■■□□□ 1.15
CLN3-218ENST00000565688 MAMDC4Q6UXC1 1216 aa22.23■■□□□ 1.15
CLN3-218ENST00000565688 ZNF467Q7Z7K2 595 aaPredicted RBP22.23■■□□□ 1.15
CLN3-218ENST00000565688 TICAM2Q86XR7 235 aa22.23■■□□□ 1.15
CLN3-218ENST00000565688 CHST13Q8NET6 341 aa22.23■■□□□ 1.15
CLN3-218ENST00000565688 CRBNQ96SW2 442 aa22.23■■□□□ 1.15
CLN3-218ENST00000565688 RAVER2Q9HCJ3 691 aaKnown RBP22.23■■□□□ 1.15
CLN3-218ENST00000565688 TAL1P17542 331 aaPredicted RBP22.22■■□□□ 1.15
CLN3-218ENST00000565688 SLC4A3P48751 1232 aa22.22■■□□□ 1.15
CLN3-218ENST00000565688 CHURC1Q8WUH1 139 aa22.22■■□□□ 1.15
CLN3-218ENST00000565688 FERMT2Q96AC1 680 aa22.22■■□□□ 1.15
CLN3-218ENST00000565688 GMCL1Q96IK5 515 aa22.22■■□□□ 1.15
CLN3-218ENST00000565688 STAT2P52630 851 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 PDE1AP54750 535 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 AAMPQ13685 434 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 TRIM60Q495X7 471 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 CCDC129Q6ZRS4 1044 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 FAM160B2Q86V87 743 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 ANKRD35Q8N283 1001 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 DEFB123Q8N688 67 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 FAM184BQ9ULE4 1060 aa22.21■■□□□ 1.15
CLN3-218ENST00000565688 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.21■■□□□ 1.15
CLN3-218ENST00000565688 TSPY2A6NKD2 308 aa22.2■■□□□ 1.14
CLN3-218ENST00000565688 TMEM232C9JQI7 657 aa22.2■■□□□ 1.14
CLN3-218ENST00000565688 FOXP2O15409 715 aa22.2■■□□□ 1.14
CLN3-218ENST00000565688 PGK1P00558 417 aa22.2■■□□□ 1.14
CLN3-218ENST00000565688 SLC1A4P43007 532 aa22.2■■□□□ 1.14
CLN3-218ENST00000565688 HELLSQ9NRZ9 838 aa22.2■■□□□ 1.14
CLN3-218ENST00000565688 ANAPC4Q9UJX5 808 aa22.2■■□□□ 1.14
CLN3-218ENST00000565688 ISY1Q9ULR0 285 aaKnown RBP22.2■■□□□ 1.14
CLN3-218ENST00000565688 LAMA2P24043 3122 aaKnown RBP22.2■■□□□ 1.14
CLN3-218ENST00000565688 SMCHD1A6NHR9 2005 aa22.19■■□□□ 1.14
CLN3-218ENST00000565688 COL6A3P12111 3177 aa22.19■■□□□ 1.14
CLN3-218ENST00000565688 PLA2G6O60733 806 aa22.19■■□□□ 1.14
CLN3-218ENST00000565688 SNAI1O95863 264 aaPredicted RBP22.19■■□□□ 1.14
CLN3-218ENST00000565688 IKQ13123 557 aaPredicted RBP22.19■■□□□ 1.14
CLN3-218ENST00000565688 ALX1Q15699 326 aa22.19■■□□□ 1.14
CLN3-218ENST00000565688 STAG1Q8WVM7 1258 aa22.19■■□□□ 1.14
CLN3-218ENST00000565688 TSEN34Q9BSV6 310 aaKnown RBP22.19■■□□□ 1.14
CLN3-218ENST00000565688 PRDM5Q9NQX1 630 aaPredicted RBP22.19■■□□□ 1.14
CLN3-218ENST00000565688 STX8Q9UNK0 236 aa22.19■■□□□ 1.14
CLN3-218ENST00000565688 CTDSPL2Q05D32 466 aa22.18■■□□□ 1.14
CLN3-218ENST00000565688 PDLIM7Q9NR12 457 aa22.18■■□□□ 1.14
CLN3-218ENST00000565688 ZHX1Q9UKY1 873 aaPredicted RBP22.18■■□□□ 1.14
CLN3-218ENST00000565688 A0A1W2PQ45 241 aaPredicted RBP22.17■■□□□ 1.14
CLN3-218ENST00000565688 A0A1W2PQY0 241 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 ADAMTS4O75173 837 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 MCCP23508 829 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 TLE2Q04725 743 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 TKFCQ3LXA3 575 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 ABHD16BQ9H3Z7 469 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 ACAD9Q9H845 621 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 IL17RBQ9NRM6 502 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 TACC3Q9Y6A5 838 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 LTBP2Q14767 1821 aa22.17■■□□□ 1.14
CLN3-218ENST00000565688 SYNRGQ9UMZ2 1314 aa22.16■■□□□ 1.14
CLN3-218ENST00000565688 ORC4O43929 436 aa22.16■■□□□ 1.14
CLN3-218ENST00000565688 RANBP6O60518 1105 aaKnown RBP22.16■■□□□ 1.14
CLN3-218ENST00000565688 DUSP11O75319 330 aaKnown RBP22.16■■□□□ 1.14
CLN3-218ENST00000565688 ACVR2BQ13705 512 aa22.16■■□□□ 1.14
CLN3-218ENST00000565688 VPS53Q5VIR6 699 aa22.16■■□□□ 1.14
CLN3-218ENST00000565688 RCSD1Q6JBY9 416 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms