RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 JAZF1Q86VZ6 243 aa8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 SLF2Q8IX21 1173 aa8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 CTCFLQ8NI51 663 aaPredicted RBP8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 FAM163AQ96GL9 167 aaPredicted RBP8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 NAP1L5Q96NT1 182 aaPredicted RBP8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 PHF20Q9BVI0 1012 aa8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 ZNF287Q9HBT7 754 aa8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 BRMS1Q9HCU9 246 aa8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 TCP11L1Q9NUJ3 509 aa8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 HOOK1Q9UJC3 728 aaKnown RBP8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 TUBE1Q9UJT0 475 aa8.31□□□□□ -1.08
HERPUD1-209ENST00000564678 CYP2D7A0A087X1C5 515 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 TSPY2A6NKD2 308 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 FAM196BA6NMK8 535 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 SMTNL1A8MU46 457 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 TPM2P07951 284 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 PLCG2P16885 1265 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 KIF5BP33176 963 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 HSPA1LP34931 641 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 TOB1P50616 345 aaPredicted RBP8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 PTK7Q13308 1070 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 NOLC1Q14978 699 aaKnown RBP eCLIP8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 PKN1Q16512 942 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 ECM1Q16610 540 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 C11orf57Q6ZUT1 292 aaPredicted RBP8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 TMTC3Q6ZXV5 915 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 DHX40Q8IX18 779 aaKnown RBP8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 TBC1D22AQ8WUA7 517 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 ZSWIM4Q9H7M6 989 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 TTC12Q9H892 705 aaPredicted RBP8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 CAPN10Q9HC96 672 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 CD209Q9NNX6 404 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 SPTLC3Q9NUV7 552 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 RNF19AQ9NV58 838 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 MCM9Q9NXL9 1143 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 FAM13BQ9NYF5 915 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 DMGDHQ9UI17 866 aaKnown RBP8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 GGA1Q9UJY5 639 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 KCNJ14Q9UNX9 436 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 SRPRBQ9Y5M8 271 aaKnown RBP8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 LAMB1P07942 1786 aa8.3□□□□□ -1.08
HERPUD1-209ENST00000564678 ROBO3Q96MS0 1386 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 NEMFO60524 1076 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 PRDM1O75626 825 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 KRT2P35908 639 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 USP5P45974 858 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 TPM4P67936 248 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 DHX8Q14562 1220 aaKnown RBP8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 KANK3Q6NY19 840 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 KRT27Q7Z3Y8 459 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 KIAA1524Q8TCG1 905 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 KCNH3Q9ULD8 1083 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 V9GY48 417 aaPredicted RBP8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 USP17L5A8MUK1 530 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 UBE2Q2LH0YL09 131 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 SMIM22K7EJ46 135 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 IKBKBO14920 756 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 MYO1BO43795 1136 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 ATP2B1P20020 1258 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 GNAQP50148 359 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 GPSM2P81274 684 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 DRC7Q8IY82 874 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 SPC24Q8NBT2 197 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 FAM174AQ8TBP5 190 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 CCDC34Q96HJ3 373 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 ACBD3Q9H3P7 528 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 CLIP2Q9UDT6 1046 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 PCDHGA10Q9Y5H3 936 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 MROH7-TTC4A0A0A0MT08 1334 aa8.29□□□□□ -1.08
HERPUD1-209ENST00000564678 GPR75-ASB3A0A0A6YYF3 556 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 UFL1O94874 794 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 TRAPPC10P48553 1259 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 GUCA2AQ02747 115 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 NR5A1Q13285 461 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 MTMR3Q13615 1198 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 KRBA2Q6ZNG9 492 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 CCDC186Q7Z3E2 898 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 SP8Q8IXZ3 490 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 ZNF444Q8N0Y2 327 aaPredicted RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 CMTR1Q8N1G2 835 aaKnown RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 CNNM3Q8NE01 707 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 HLA-CQ95604 372 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 ZNF830Q96NB3 372 aaPredicted RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 METTL14Q9HCE5 456 aaKnown RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 CABP5Q9NP86 173 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 SH3GLB2Q9NR46 395 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 FBXO2Q9UK22 296 aaPredicted RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 TRIM75PA6NK02 468 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 POLRMTO00411 1230 aaKnown RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 PFKFB3Q16875 520 aaPredicted RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 EAPPQ56P03 285 aaPredicted RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 PRPF38BQ5VTL8 546 aaKnown RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 RCSD1Q6JBY9 416 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 SRBD1Q8N5C6 995 aaKnown RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 FERMT2Q96AC1 680 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 CLIC6Q96NY7 704 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 RTFDC1Q9BY42 306 aaPredicted RBP8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 KCNF1Q9H3M0 494 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 KAT14Q9H8E8 782 aa8.28□□□□□ -1.08
HERPUD1-209ENST00000564678 MKNK2Q9HBH9 465 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms