RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 PNMA3Q9UL41 463 aa23.98■■□□□ 1.43
CLN3-212ENST00000564574 THSD7BQ9C0I4 1608 aa23.98■■□□□ 1.43
CLN3-212ENST00000564574 CDKL5O76039 1030 aa23.97■■□□□ 1.43
CLN3-212ENST00000564574 OSBPP22059 807 aa23.97■■□□□ 1.43
CLN3-212ENST00000564574 IKQ13123 557 aaPredicted RBP23.97■■□□□ 1.43
CLN3-212ENST00000564574 NECAB1Q8N987 351 aa23.97■■□□□ 1.43
CLN3-212ENST00000564574 SLF1Q9BQI6 1058 aa23.97■■□□□ 1.43
CLN3-212ENST00000564574 WDR33Q9C0J8 1336 aaKnown RBP23.97■■□□□ 1.43
CLN3-212ENST00000564574 NCOA5Q9HCD5 579 aaKnown RBP23.97■■□□□ 1.43
CLN3-212ENST00000564574 RBM19Q9Y4C8 960 aaKnown RBP23.97■■□□□ 1.43
CLN3-212ENST00000564574 BTBD19C9JJ37 291 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 FLOT1O75955 427 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 PLEKHA8P1O95397 391 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 IFNAR1P17181 557 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 TM4SF4P48230 202 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 KIF23Q02241 960 aaPredicted RBP23.96■■□□□ 1.43
CLN3-212ENST00000564574 GRM1Q13255 1194 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 COG2Q14746 738 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 SYDE2Q5VT97 1194 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 OTUD7BQ6GQQ9 843 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 TTBK2Q6IQ55 1244 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 CCDC83Q8IWF9 413 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 PRPF38AQ8NAV1 312 aaKnown RBP23.96■■□□□ 1.43
CLN3-212ENST00000564574 LLPHQ9BRT6 129 aaKnown RBP23.96■■□□□ 1.43
CLN3-212ENST00000564574 RIOX1Q9H6W3 641 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 PPP1R9AQ9ULJ8 1098 aa23.96■■□□□ 1.43
CLN3-212ENST00000564574 FDX1P10109 184 aa23.95■■□□□ 1.42
CLN3-212ENST00000564574 MAP2K2P36507 400 aa23.95■■□□□ 1.42
CLN3-212ENST00000564574 IRX3P78415 501 aaPredicted RBP23.95■■□□□ 1.42
CLN3-212ENST00000564574 CUL4AQ13619 759 aa23.95■■□□□ 1.42
CLN3-212ENST00000564574 NTRK3Q16288 839 aa23.95■■□□□ 1.42
CLN3-212ENST00000564574 SRBD1Q8N5C6 995 aaKnown RBP23.95■■□□□ 1.42
CLN3-212ENST00000564574 UBA5Q9GZZ9 404 aa23.95■■□□□ 1.42
CLN3-212ENST00000564574 HOXC10Q9NYD6 342 aa23.95■■□□□ 1.42
CLN3-212ENST00000564574 A0A0G2JMZ2 1700 aa23.94■■□□□ 1.42
CLN3-212ENST00000564574 DSG3P32926 999 aa23.94■■□□□ 1.42
CLN3-212ENST00000564574 ST3GAL1Q11201 340 aa23.94■■□□□ 1.42
CLN3-212ENST00000564574 GTF3C2Q8WUA4 911 aaPredicted RBP23.94■■□□□ 1.42
CLN3-212ENST00000564574 PTPN18Q99952 460 aa23.94■■□□□ 1.42
CLN3-212ENST00000564574 RBM27Q9P2N5 1060 aaKnown RBP23.94■■□□□ 1.42
CLN3-212ENST00000564574 PRR12Q9ULL5 1215 aa23.94■■□□□ 1.42
CLN3-212ENST00000564574 CNTNAP5Q8WYK1 1306 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 PDHXO00330 501 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 SLC16A2P36021 539 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 VEGFBP49765 207 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 FUT2Q10981 343 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 IFNL1Q8IU54 200 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 ADGRF4Q8IZF3 695 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 FAM43AQ8N2R8 423 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 KIFC2Q96AC6 838 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 RNF26Q9BY78 433 aaPredicted RBP23.93■■□□□ 1.42
CLN3-212ENST00000564574 ASCC2Q9H1I8 757 aaPredicted RBP23.93■■□□□ 1.42
CLN3-212ENST00000564574 FBXO28Q9NVF7 368 aa23.93■■□□□ 1.42
CLN3-212ENST00000564574 BAZ2BQ9UIF8 2168 aaKnown RBP23.93■■□□□ 1.42
CLN3-212ENST00000564574 COL11A1P12107 1806 aaPredicted RBP23.93■■□□□ 1.42
CLN3-212ENST00000564574 STK36Q9NRP7 1315 aa23.92■■□□□ 1.42
CLN3-212ENST00000564574 CYTH3O43739 400 aa23.92■■□□□ 1.42
CLN3-212ENST00000564574 LBX2Q6XYB7 198 aa23.92■■□□□ 1.42
CLN3-212ENST00000564574 NBPF11Q86T75 865 aa23.92■■□□□ 1.42
CLN3-212ENST00000564574 TRIM22Q8IYM9 498 aa23.92■■□□□ 1.42
CLN3-212ENST00000564574 MTMR8Q96EF0 704 aa23.92■■□□□ 1.42
CLN3-212ENST00000564574 INTS4Q96HW7 963 aaKnown RBP23.92■■□□□ 1.42
CLN3-212ENST00000564574 CPVLQ9H3G5 476 aa23.92■■□□□ 1.42
CLN3-212ENST00000564574 JMJD4Q9H9V9 463 aa23.92■■□□□ 1.42
CLN3-212ENST00000564574 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.92■■□□□ 1.42
CLN3-212ENST00000564574 SPDYE16A6NNV3 312 aaPredicted RBP23.91■■□□□ 1.42
CLN3-212ENST00000564574 IGF2BP3O00425 579 aaKnown RBP eCLIP23.91■■□□□ 1.42
CLN3-212ENST00000564574 PRPF3O43395 683 aaKnown RBP23.91■■□□□ 1.42
CLN3-212ENST00000564574 AOC2O75106 756 aa23.91■■□□□ 1.42
CLN3-212ENST00000564574 SSRP1Q08945 709 aaKnown RBP23.91■■□□□ 1.42
CLN3-212ENST00000564574 SLC35G1Q2M3R5 365 aa23.91■■□□□ 1.42
CLN3-212ENST00000564574 CMTR1Q8N1G2 835 aaKnown RBP23.91■■□□□ 1.42
CLN3-212ENST00000564574 NSUN7Q8NE18 718 aaKnown RBP23.91■■□□□ 1.42
CLN3-212ENST00000564574 RRP36Q96EU6 259 aaKnown RBP23.91■■□□□ 1.42
CLN3-212ENST00000564574 PARK7Q99497 189 aaKnown RBP23.91■■□□□ 1.42
CLN3-212ENST00000564574 RANBP17Q9H2T7 1088 aaKnown RBP23.91■■□□□ 1.42
CLN3-212ENST00000564574 ADAMTS5Q9UNA0 930 aa23.91■■□□□ 1.42
CLN3-212ENST00000564574 ZBED4O75132 1171 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 FMNL1O95466 1100 aaPredicted RBP23.9■■□□□ 1.42
CLN3-212ENST00000564574 CTDNEP1O95476 244 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 ALDH1A1P00352 501 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 HMGN5P82970 282 aaKnown RBP23.9■■□□□ 1.42
CLN3-212ENST00000564574 AKAP17AQ02040 695 aaKnown RBP23.9■■□□□ 1.42
CLN3-212ENST00000564574 CCDC82Q8N4S0 544 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 MB21D1Q8N884 522 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 SMARCC2Q8TAQ2 1214 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 ATG4CQ96DT6 458 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 ZIC5Q96T25 663 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 P2RX7Q99572 595 aaKnown RBP23.9■■□□□ 1.42
CLN3-212ENST00000564574 VAT1LQ9HCJ6 419 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 SEC63Q9UGP8 760 aaKnown RBP23.9■■□□□ 1.42
CLN3-212ENST00000564574 PNMA2Q9UL42 364 aa23.9■■□□□ 1.42
CLN3-212ENST00000564574 HERVK_113P62684 666 aa23.89■■□□□ 1.41
CLN3-212ENST00000564574 SLC26A6Q9BXS9 759 aa23.89■■□□□ 1.41
CLN3-212ENST00000564574 SLC38A10Q9HBR0 1119 aa23.89■■□□□ 1.41
CLN3-212ENST00000564574 CTDP1Q9Y5B0 961 aaPredicted RBP23.89■■□□□ 1.41
CLN3-212ENST00000564574 PTPDC1A2A3K4 754 aa23.88■■□□□ 1.41
CLN3-212ENST00000564574 VWA5AO00534 786 aa23.88■■□□□ 1.41
CLN3-212ENST00000564574 ZBTB5O15062 677 aa23.88■■□□□ 1.41
CLN3-212ENST00000564574 HSPA1AP0DMV8 641 aaKnown RBP23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms