RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 EHD4Q9H223 541 aa21.78■■□□□ 1.08
SMPD3-203ENST00000563226 RIOX1Q9H6W3 641 aa21.78■■□□□ 1.08
SMPD3-203ENST00000563226 IKBKBO14920 756 aa21.77■■□□□ 1.08
SMPD3-203ENST00000563226 PPIP5K2O43314 1243 aa21.77■■□□□ 1.08
SMPD3-203ENST00000563226 SMARCA1P28370 1054 aa21.77■■□□□ 1.08
SMPD3-203ENST00000563226 CASP1P29466 404 aa21.77■■□□□ 1.08
SMPD3-203ENST00000563226 HDLBPQ00341 1268 aaKnown RBP21.77■■□□□ 1.08
SMPD3-203ENST00000563226 SMARCE1Q969G3 411 aa21.77■■□□□ 1.08
SMPD3-203ENST00000563226 GPCPD1Q9NPB8 672 aa21.77■■□□□ 1.08
SMPD3-203ENST00000563226 PSME4Q14997 1843 aa21.77■■□□□ 1.08
SMPD3-203ENST00000563226 SMTNL1A8MU46 457 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 LMOD1P29536 600 aaPredicted RBP21.76■■□□□ 1.07
SMPD3-203ENST00000563226 IDI2Q9BXS1 227 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 SEC63Q9UGP8 760 aaKnown RBP21.76■■□□□ 1.07
SMPD3-203ENST00000563226 SMCO2A6NFE2 343 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 SLFN14P0C7P3 912 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 ATP1A3P13637 1013 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 AFMP43652 599 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 ASPRV1Q53RT3 343 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 KANK3Q6NY19 840 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 SH3RF1Q7Z6J0 888 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 KIAA1524Q8TCG1 905 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 TMEM60Q9H2L4 133 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 SERPINA10Q9UK55 444 aa21.76■■□□□ 1.07
SMPD3-203ENST00000563226 ATP2B2Q01814 1243 aa21.75■■□□□ 1.07
SMPD3-203ENST00000563226 MORC3Q14149 939 aa21.75■■□□□ 1.07
SMPD3-203ENST00000563226 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.75■■□□□ 1.07
SMPD3-203ENST00000563226 SPATA20Q8TB22 786 aa21.75■■□□□ 1.07
SMPD3-203ENST00000563226 PAGE5Q96GU1 130 aa21.75■■□□□ 1.07
SMPD3-203ENST00000563226 NAP1L5Q96NT1 182 aaPredicted RBP21.75■■□□□ 1.07
SMPD3-203ENST00000563226 IFNKQ9P0W0 207 aa21.75■■□□□ 1.07
SMPD3-203ENST00000563226 MYL5Q02045 173 aa21.75■■□□□ 1.07
SMPD3-203ENST00000563226 ARID5BQ14865 1188 aa21.75■■□□□ 1.07
SMPD3-203ENST00000563226 NOLC1Q14978 699 aaKnown RBP eCLIP21.75■■□□□ 1.07
SMPD3-203ENST00000563226 CC2D2BQ6DHV5 1058 aa21.75■■□□□ 1.07
SMPD3-203ENST00000563226 CACTINQ8WUQ7 758 aaKnown RBP21.75■■□□□ 1.07
SMPD3-203ENST00000563226 XPO4Q9C0E2 1151 aaKnown RBP21.75■■□□□ 1.07
SMPD3-203ENST00000563226 TDRD3Q9H7E2 651 aaKnown RBP21.75■■□□□ 1.07
SMPD3-203ENST00000563226 COL4A5P29400 1685 aa21.74■■□□□ 1.07
SMPD3-203ENST00000563226 ZNF543Q08ER8 600 aa21.74■■□□□ 1.07
SMPD3-203ENST00000563226 E2F4Q16254 413 aa21.74■■□□□ 1.07
SMPD3-203ENST00000563226 ARL6IP4Q66PJ3 421 aaKnown RBP21.74■■□□□ 1.07
SMPD3-203ENST00000563226 TTBK2Q6IQ55 1244 aa21.74■■□□□ 1.07
SMPD3-203ENST00000563226 ZSCAN29Q8IWY8 852 aaPredicted RBP21.74■■□□□ 1.07
SMPD3-203ENST00000563226 FAM177A1Q8N128 213 aaPredicted RBP21.74■■□□□ 1.07
SMPD3-203ENST00000563226 CCDC12Q8WUD4 166 aaPredicted RBP21.74■■□□□ 1.07
SMPD3-203ENST00000563226 SMC2O95347 1197 aa21.73■■□□□ 1.07
SMPD3-203ENST00000563226 CDC25AP30304 524 aa21.73■■□□□ 1.07
SMPD3-203ENST00000563226 SUPT20HQ8NEM7 779 aa21.73■■□□□ 1.07
SMPD3-203ENST00000563226 STAMQ92783 540 aa21.73■■□□□ 1.07
SMPD3-203ENST00000563226 COA7Q96BR5 231 aa21.73■■□□□ 1.07
SMPD3-203ENST00000563226 DHX36Q9H2U1 1008 aaKnown RBP21.73■■□□□ 1.07
SMPD3-203ENST00000563226 C6orf50Q9HD87 102 aa21.73■■□□□ 1.07
SMPD3-203ENST00000563226 TPM4P67936 248 aa21.73■■□□□ 1.07
SMPD3-203ENST00000563226 FMR1Q06787 632 aaKnown RBP eCLIP21.73■■□□□ 1.07
SMPD3-203ENST00000563226 CFAP100Q494V2 611 aa21.73■■□□□ 1.07
SMPD3-203ENST00000563226 FILIP1Q7Z7B0 1213 aa21.72■■□□□ 1.07
SMPD3-203ENST00000563226 TTLL6Q8N841 843 aa21.72■■□□□ 1.07
SMPD3-203ENST00000563226 PRMT6Q96LA8 375 aaPredicted RBP21.72■■□□□ 1.07
SMPD3-203ENST00000563226 SPTLC3Q9NUV7 552 aa21.72■■□□□ 1.07
SMPD3-203ENST00000563226 PI4KBQ9UBF8 816 aa21.72■■□□□ 1.07
SMPD3-203ENST00000563226 KCNA3P22001 575 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 FANCCQ00597 558 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 DPYDQ12882 1025 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 SOGA3Q5TF21 947 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 JMJD4Q9H9V9 463 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 TMEM260Q9NX78 707 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 DPEP1P16444 411 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 GNA11P29992 359 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 SLC16A2P36021 539 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 LONP1P36776 959 aaKnown RBP21.71■■□□□ 1.07
SMPD3-203ENST00000563226 BAG6P46379 1132 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 NONOQ15233 471 aaKnown RBP eCLIP21.71■■□□□ 1.07
SMPD3-203ENST00000563226 PDXDC2PQ6P474 469 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 KCTD1Q719H9 257 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 KRT25Q7Z3Z0 450 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 ADGRF4Q8IZF3 695 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 TRIML1Q8N9V2 468 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 CCDC17Q96LX7 622 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 MED15Q96RN5 788 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 FANCLQ9NW38 375 aa21.71■■□□□ 1.07
SMPD3-203ENST00000563226 BIN2Q9UBW5 565 aaPredicted RBP21.71■■□□□ 1.07
SMPD3-203ENST00000563226 PP2D1A8MPX8 630 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 PPP1R11O60927 126 aaPredicted RBP21.7■■□□□ 1.06
SMPD3-203ENST00000563226 CCDC96Q2M329 555 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 CERKLQ49MI3 558 aaPredicted RBP21.7■■□□□ 1.06
SMPD3-203ENST00000563226 CCDC93Q567U6 631 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 JAKMIP3Q5VZ66 844 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 DPF2Q92785 391 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 MTRQ99707 1265 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 ESYT2A0FGR8 921 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 NPM3O75607 178 aaKnown RBP21.7■■□□□ 1.06
SMPD3-203ENST00000563226 LETM2Q2VYF4 491 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 TRMT44Q8IYL2 757 aaKnown RBP21.7■■□□□ 1.06
SMPD3-203ENST00000563226 MLKLQ8NB16 471 aa21.7■■□□□ 1.06
SMPD3-203ENST00000563226 ZNF277Q9NRM2 450 aaPredicted RBP21.7■■□□□ 1.06
SMPD3-203ENST00000563226 EEF2P13639 858 aaKnown RBP21.69■■□□□ 1.06
SMPD3-203ENST00000563226 KARSQ15046 597 aaKnown RBP21.69■■□□□ 1.06
SMPD3-203ENST00000563226 TATDN1Q6P1N9 297 aa21.69■■□□□ 1.06
SMPD3-203ENST00000563226 DTHD1Q6ZMT9 781 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms