RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 DEPDC7Q96QD5 511 aa7.22□□□□□ -1.25
VPS13C-210ENST00000561258 ADAMTS20P59510 1910 aa7.21□□□□□ -1.25
VPS13C-210ENST00000561258 FAM221BA6H8Z2 402 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 TLR3O15455 904 aaKnown RBP7.21□□□□□ -1.26
VPS13C-210ENST00000561258 LMNB1P20700 586 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 EGR3Q06889 387 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 MPP2Q14168 576 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 TIGD5Q53EQ6 642 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 TNNI3KQ59H18 835 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 ACSF2Q96CM8 615 aaPredicted RBP7.21□□□□□ -1.26
VPS13C-210ENST00000561258 KRTAP9-3Q9BYQ3 159 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 MIR1-1HGQ9H1L0 117 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 DUSP13Q9UII6 198 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 CEP131Q9UPN4 1083 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 MSRB2Q9Y3D2 182 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 TACC3Q9Y6A5 838 aa7.21□□□□□ -1.26
VPS13C-210ENST00000561258 RB1CC1Q8TDY2 1594 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 CILPO75339 1184 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 ZGLP1P0C6A0 271 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 HOXA5P20719 270 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 GIPRP48546 466 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 CTSWP56202 376 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 MCATQ8IVS2 390 aaKnown RBP7.2□□□□□ -1.26
VPS13C-210ENST00000561258 PPP1R13LQ8WUF5 828 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 GPATCH3Q96I76 525 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 C20orf173Q96LM9 149 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 MCOLN1Q9GZU1 580 aa7.2□□□□□ -1.26
VPS13C-210ENST00000561258 TRIT1Q9H3H1 467 aaKnown RBP7.2□□□□□ -1.26
VPS13C-210ENST00000561258 SRFP11831 508 aa7.19□□□□□ -1.26
VPS13C-210ENST00000561258 EIF6P56537 245 aaKnown RBP7.19□□□□□ -1.26
VPS13C-210ENST00000561258 CWF19L2Q2TBE0 894 aaKnown RBP7.19□□□□□ -1.26
VPS13C-210ENST00000561258 REC114Q7Z4M0 266 aa7.19□□□□□ -1.26
VPS13C-210ENST00000561258 ZNF605Q86T29 641 aa7.19□□□□□ -1.26
VPS13C-210ENST00000561258 CELF2-AS1Q8N7Q2 184 aa7.19□□□□□ -1.26
VPS13C-210ENST00000561258 PDZD8Q8NEN9 1154 aa7.19□□□□□ -1.26
VPS13C-210ENST00000561258 GPATCH2Q9NW75 528 aa7.19□□□□□ -1.26
VPS13C-210ENST00000561258 ZNRF3Q9ULT6 936 aa7.19□□□□□ -1.26
VPS13C-210ENST00000561258 R3HCC1Q9Y3T6 440 aaKnown RBP7.19□□□□□ -1.26
VPS13C-210ENST00000561258 MYOCOSA0A1B0GUC4 107 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 UPK3BL1B0FP48 263 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 UPK3BL2E5RIL1 263 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 LRRN2O75325 713 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 PDE4BQ07343 736 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 TSPYL5Q86VY4 417 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-210ENST00000561258 REXO1Q8N1G1 1221 aaKnown RBP7.18□□□□□ -1.26
VPS13C-210ENST00000561258 DTWD2Q8NBA8 298 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 OR6P1Q8NGX9 317 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 JARID2Q92833 1246 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-210ENST00000561258 FERD3LQ96RJ6 166 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 GPR62Q9BZJ7 368 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 CCDC113Q9H0I3 377 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 PCDHA11Q9Y5I1 949 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 CORINQ9Y5Q5 1042 aa7.18□□□□□ -1.26
VPS13C-210ENST00000561258 LTKP29376 864 aa7.17□□□□□ -1.26
VPS13C-210ENST00000561258 MCM4P33991 863 aa7.17□□□□□ -1.26
VPS13C-210ENST00000561258 ZNF165P49910 485 aa7.17□□□□□ -1.26
VPS13C-210ENST00000561258 DLG4P78352 724 aa7.17□□□□□ -1.26
VPS13C-210ENST00000561258 DDR2Q16832 855 aa7.17□□□□□ -1.26
VPS13C-210ENST00000561258 LILRA2Q8N149 483 aa7.17□□□□□ -1.26
VPS13C-210ENST00000561258 BRMS1Q9HCU9 246 aa7.17□□□□□ -1.26
VPS13C-210ENST00000561258 ACTR10Q9NZ32 417 aa7.17□□□□□ -1.26
VPS13C-210ENST00000561258 CLSTN1O94985 981 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 RPL6Q02878 288 aaKnown RBP7.16□□□□□ -1.26
VPS13C-210ENST00000561258 CLCQ05315 142 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 PTPROQ16827 1216 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 PLEKHG4Q58EX7 1191 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 IRF2BP1Q8IU81 584 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 OXR1Q8N573 874 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 RBBP8NLQ8NC74 664 aaPredicted RBP7.16□□□□□ -1.26
VPS13C-210ENST00000561258 SGPP1Q9BX95 441 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 SLC6A17Q9H1V8 727 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 EBF1Q9UH73 591 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 ADAM30Q9UKF2 790 aa7.16□□□□□ -1.26
VPS13C-210ENST00000561258 FITM1A5D6W6 292 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 CCDC85CA6NKD9 419 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 IMPDH2P12268 514 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 GALK1P51570 392 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 GK5Q6ZS86 529 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 LSRQ86X29 649 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-210ENST00000561258 BAHD1Q8TBE0 780 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-210ENST00000561258 SH3TC2Q8TF17 1288 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 INTS4Q96HW7 963 aaKnown RBP7.15□□□□□ -1.26
VPS13C-210ENST00000561258 CRBNQ96SW2 442 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 EHMT1Q9H9B1 1298 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 KANSL2Q9H9L4 492 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 PARD6AQ9NPB6 346 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 KCNH3Q9ULD8 1083 aa7.15□□□□□ -1.26
VPS13C-210ENST00000561258 YBX2Q9Y2T7 364 aaKnown RBP7.15□□□□□ -1.26
VPS13C-210ENST00000561258 BPNT1O95861 308 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 BMP7P18075 431 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 PLCG1P19174 1290 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 RASGRF1Q13972 1273 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 FBXW10Q5XX13 1052 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 TMEM132EQ6IEE7 984 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 LILRB2Q8N423 598 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 FAM13CQ8NE31 585 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 CYB5D2Q8WUJ1 264 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 DNAJC7Q99615 494 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 BRINP2Q9C0B6 783 aa7.14□□□□□ -1.27
VPS13C-210ENST00000561258 PEX10O60683 326 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms