RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 EHMT1Q9H9B1 1298 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 MTMR4Q9NYA4 1195 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 COL18A1P39060 1754 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 DOT1LQ8TEK3 1739 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 TCRBV5S4A2TA0A5A2 114 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 NOP56O00567 594 aaKnown RBP6.19□□□□□ -1.42
VPS13C-209ENST00000560637 CSPG5O95196 566 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 STAT6P42226 847 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 TECP42680 631 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 IGBP1P78318 339 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 KCTD2Q14681 263 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 GRIPAP1Q4V328 841 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 DTHD1Q6ZMT9 781 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 DYMQ7RTS9 669 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 BLIDQ8IZY5 108 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 GPC2Q8N158 579 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 GJA10Q969M2 543 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 CALML4Q96GE6 196 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 ZSCAN16Q9H4T2 348 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-209ENST00000560637 MRVI1Q9Y6F6 885 aa6.19□□□□□ -1.42
VPS13C-209ENST00000560637 FAM205CA6NFA0 338 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 ASIC1P78348 528 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 HTRA3P83110 453 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 QRICH1Q2TAL8 776 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 UTP14CQ5TAP6 766 aaKnown RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 FILIP1Q7Z7B0 1213 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 NEDD1Q8NHV4 660 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 ZNF668Q96K58 619 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 KIF2CQ99661 725 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 FAM198AQ9UFP1 575 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 TSKSQ9UJT2 592 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 MTMR6Q9Y217 621 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 NHSQ6T4R5 1651 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 NRDCO43847 1150 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 COBLO75128 1261 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 SERPINC1P01008 464 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 RHBDL3P58872 404 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 TAF1CQ15572 869 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 MAP3K11Q16584 847 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 GPATCH4Q5T3I0 446 aaKnown RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 TCERG1LQ5VWI1 586 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 SLC30A10Q6XR72 485 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 TPH2Q8IWU9 490 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 SRBD1Q8N5C6 995 aaKnown RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 GLG1Q92896 1179 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 ATG4CQ96DT6 458 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 SLC24A3Q9HC58 644 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 CCDC39Q9UFE4 941 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 CLIC4Q9Y696 253 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 CCL15-CCL14A0A0B4J2E2 113 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 GCOM1H8Y6P7 765 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 POLR2DO15514 142 aaKnown RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 VIL1P09327 827 aaKnown RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 POLR2MP0CAP2 368 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 RPS12P25398 132 aaKnown RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 MAP3K9P80192 1104 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 CACNB1Q02641 598 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 CCL15Q16663 113 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 MYSM1Q5VVJ2 828 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 KRT79Q5XKE5 535 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 PNMA8AQ86V59 439 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 DGKHQ86XP1 1220 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 ADGRF4Q8IZF3 695 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 FBXO18Q8NFZ0 1043 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 TBCKQ8TEA7 893 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 FAM212AQ96EL1 285 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 ZNF512BQ96KM6 892 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 TCHPQ9BT92 498 aa6.18□□□□□ -1.42
VPS13C-209ENST00000560637 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS13C-209ENST00000560637 FAM205AQ6ZU69 1335 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 POTEB2H3BUK9 544 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 CCT6AP40227 531 aaKnown RBP6.17□□□□□ -1.42
VPS13C-209ENST00000560637 DHX37Q8IY37 1157 aaKnown RBP6.17□□□□□ -1.42
VPS13C-209ENST00000560637 ANKRD13CQ8N6S4 541 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 SNX29Q8TEQ0 813 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 ZNF384Q8TF68 577 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 INTS4Q96HW7 963 aaKnown RBP6.17□□□□□ -1.42
VPS13C-209ENST00000560637 AGBL1Q96MI9 1066 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 BLZF1Q9H2G9 400 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 GBA2Q9HCG7 927 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-209ENST00000560637 HERC5Q9UII4 1024 aaKnown RBP6.17□□□□□ -1.42
VPS13C-209ENST00000560637 SUGT1Q9Y2Z0 365 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 MEIS1O00470 390 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 ENTPD3O75355 529 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 DDAH1O94760 285 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 CCDC192P0DO97 292 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 CYP2C8P10632 490 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 MARK3P27448 753 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 LIFRP42702 1097 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 CALCRLQ16602 461 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 RRAGBQ5VZM2 374 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 NBPF11Q86T75 865 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 NOSTRINQ8IVI9 506 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 ZNF280CQ8ND82 737 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 ANKRD20A12PQ8NF67 263 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 IGDCC4Q8TDY8 1250 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 MRPS27Q92552 414 aaKnown RBP6.17□□□□□ -1.42
VPS13C-209ENST00000560637 TSPY26PQ9H489 355 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 RNF146Q9NTX7 359 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 NOD1Q9Y239 953 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms