RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 COPB2P35606 906 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 STAT3P40763 770 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 SHHQ15465 462 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 SBK1Q52WX2 424 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 C9orf50Q5SZB4 431 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 FAM83BQ5T0W9 1011 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 ZSCAN25Q6NSZ9 544 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 SAMD1Q6SPF0 538 aaPredicted RBP16.64■□□□□ 0.25
LDLR-213ENST00000560502 PI4K2BQ8TCG2 481 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 TINF2Q9BSI4 451 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 XPNPEP3Q9NQH7 507 aa16.64■□□□□ 0.25
LDLR-213ENST00000560502 LAMA2P24043 3122 aaKnown RBP16.63■□□□□ 0.25
LDLR-213ENST00000560502 TRIM43BA6NCK2 446 aa16.63■□□□□ 0.25
LDLR-213ENST00000560502 ZNF865P0CJ78 1059 aaPredicted RBP16.63■□□□□ 0.25
LDLR-213ENST00000560502 RARBP10826 455 aa16.63■□□□□ 0.25
LDLR-213ENST00000560502 TAL1P17542 331 aaPredicted RBP16.63■□□□□ 0.25
LDLR-213ENST00000560502 KCTD2Q14681 263 aa16.63■□□□□ 0.25
LDLR-213ENST00000560502 SH3RF1Q7Z6J0 888 aa16.63■□□□□ 0.25
LDLR-213ENST00000560502 TICAM2Q86XR7 235 aa16.63■□□□□ 0.25
LDLR-213ENST00000560502 BADQ92934 168 aa16.63■□□□□ 0.25
LDLR-213ENST00000560502 FERMT2Q96AC1 680 aa16.63■□□□□ 0.25
LDLR-213ENST00000560502 TRIM43Q96BQ3 446 aaPredicted RBP16.63■□□□□ 0.25
LDLR-213ENST00000560502 STRBPQ96SI9 672 aaKnown RBP16.63■□□□□ 0.25
LDLR-213ENST00000560502 PRDM5Q9NQX1 630 aaPredicted RBP16.63■□□□□ 0.25
LDLR-213ENST00000560502 MCM3APO60318 1980 aa16.63■□□□□ 0.25
LDLR-213ENST00000560502 MYCNP04198 464 aaPredicted RBP16.62■□□□□ 0.25
LDLR-213ENST00000560502 RASA1P20936 1047 aa16.62■□□□□ 0.25
LDLR-213ENST00000560502 TLE2Q04725 743 aa16.62■□□□□ 0.25
LDLR-213ENST00000560502 GSG1L2A8MUP6 293 aa16.61■□□□□ 0.25
LDLR-213ENST00000560502 ADAMTS4O75173 837 aa16.61■□□□□ 0.25
LDLR-213ENST00000560502 PGK1P00558 417 aa16.61■□□□□ 0.25
LDLR-213ENST00000560502 ZNF697Q5TEC3 545 aa16.61■□□□□ 0.25
LDLR-213ENST00000560502 GIMAP6Q6P9H5 292 aa16.61■□□□□ 0.25
LDLR-213ENST00000560502 NUP88Q99567 741 aaPredicted RBP16.61■□□□□ 0.25
LDLR-213ENST00000560502 SLF1Q9BQI6 1058 aa16.61■□□□□ 0.25
LDLR-213ENST00000560502 NYAP2Q9P242 653 aa16.61■□□□□ 0.25
LDLR-213ENST00000560502 DNAJC25-GNG10A0A024R161 153 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 IGKV6D-41A0A0C4DH26 115 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 A0A1W2PQ45 241 aaPredicted RBP16.6■□□□□ 0.25
LDLR-213ENST00000560502 A0A1W2PQY0 241 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 EPB41L2O43491 1005 aaKnown RBP16.6■□□□□ 0.25
LDLR-213ENST00000560502 NDUFB10O96000 172 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 AKR1A1P14550 325 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 ITGB8P26012 769 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.6■□□□□ 0.25
LDLR-213ENST00000560502 RNF180Q86T96 592 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 MSL3Q8N5Y2 521 aaKnown RBP16.6■□□□□ 0.25
LDLR-213ENST00000560502 KBTBD3Q8NAB2 608 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 LENG1Q96BZ8 264 aaPredicted RBP16.6■□□□□ 0.25
LDLR-213ENST00000560502 FAM161BQ96MY7 647 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 TBC1D32Q96NH3 1257 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 TEX13BQ9BXU2 312 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 EPB41L4AQ9HCS5 686 aaPredicted RBP16.6■□□□□ 0.25
LDLR-213ENST00000560502 UNC80Q8N2C7 3258 aa16.6■□□□□ 0.25
LDLR-213ENST00000560502 ATP2A1O14983 1001 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 KIAA0355O15063 1070 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 REC8O95072 547 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 CLTBP09497 229 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 SMAD3P84022 425 aaKnown RBP16.59■□□□□ 0.25
LDLR-213ENST00000560502 MAMDC4Q6UXC1 1216 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.59■□□□□ 0.25
LDLR-213ENST00000560502 APPBP2Q92624 585 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 OSBP2Q969R2 916 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 EVI5LQ96CN4 794 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 TACC3Q9Y6A5 838 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 SYNGAP1Q96PV0 1343 aa16.59■□□□□ 0.25
LDLR-213ENST00000560502 TRIM6-TRIM34B2RNG4 842 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 F5H6K3 240 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 HIP1O00291 1037 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 RAD21O60216 631 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 SNAI1O95863 264 aaPredicted RBP16.58■□□□□ 0.24
LDLR-213ENST00000560502 EPHB4P54760 987 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 KLRC3Q07444 240 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 SNRNP48Q6IEG0 339 aaKnown RBP16.58■□□□□ 0.24
LDLR-213ENST00000560502 CDX2Q99626 313 aaPredicted RBP16.58■□□□□ 0.24
LDLR-213ENST00000560502 TSEN34Q9BSV6 310 aaKnown RBP16.58■□□□□ 0.24
LDLR-213ENST00000560502 CNPY2Q9Y2B0 182 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 RIPK3Q9Y572 518 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 SYNRGQ9UMZ2 1314 aa16.58■□□□□ 0.24
LDLR-213ENST00000560502 PLIN4Q96Q06 1357 aa16.57■□□□□ 0.24
LDLR-213ENST00000560502 TSHZ3Q63HK5 1081 aa16.57■□□□□ 0.24
LDLR-213ENST00000560502 CCSAPQ6IQ19 270 aaPredicted RBP16.57■□□□□ 0.24
LDLR-213ENST00000560502 ANKRD33Q7Z3H0 272 aa16.57■□□□□ 0.24
LDLR-213ENST00000560502 ZNF467Q7Z7K2 595 aaPredicted RBP16.57■□□□□ 0.24
LDLR-213ENST00000560502 PRPF38AQ8NAV1 312 aaKnown RBP16.57■□□□□ 0.24
LDLR-213ENST00000560502 KLHDC9Q8NEP7 349 aa16.57■□□□□ 0.24
LDLR-213ENST00000560502 FGD4Q96M96 766 aa16.57■□□□□ 0.24
LDLR-213ENST00000560502 COL25A1Q9BXS0 654 aaPredicted RBP16.57■□□□□ 0.24
LDLR-213ENST00000560502 TTYH1Q9H313 450 aaPredicted RBP16.57■□□□□ 0.24
LDLR-213ENST00000560502 SEMA6BQ9H3T3 888 aa16.57■□□□□ 0.24
LDLR-213ENST00000560502 MKNK2Q9HBH9 465 aa16.57■□□□□ 0.24
LDLR-213ENST00000560502 SYNPO2Q9UMS6 1093 aa16.57■□□□□ 0.24
LDLR-213ENST00000560502 LRRC37A2A6NM11 1700 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 MINDY4BA8MYZ0 360 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 RNF113AO15541 343 aaKnown RBP16.56■□□□□ 0.24
LDLR-213ENST00000560502 GPAA1O43292 621 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 PQBP1O60828 265 aaKnown RBP16.56■□□□□ 0.24
LDLR-213ENST00000560502 SEC24BO95487 1268 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 RBM25P49756 843 aaKnown RBP16.56■□□□□ 0.24
LDLR-213ENST00000560502 ACLYP53396 1101 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms