RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 PRPF38AQ8NAV1 312 aaKnown RBP12.95□□□□□ -0.34
SPG11-216ENST00000559347 NPLOC4Q8TAT6 608 aa12.95□□□□□ -0.34
SPG11-216ENST00000559347 GMCL1Q96IK5 515 aa12.95□□□□□ -0.34
SPG11-216ENST00000559347 CRISPLD2Q9H0B8 497 aa12.95□□□□□ -0.34
SPG11-216ENST00000559347 HMX1Q9NP08 348 aaPredicted RBP12.95□□□□□ -0.34
SPG11-216ENST00000559347 FLRT1Q9NZU1 646 aa12.95□□□□□ -0.34
SPG11-216ENST00000559347 MYH6P13533 1939 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 STRNO43815 780 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 SLC25A27O95847 323 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 IGHA2P01877 340 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 BMP3P12645 472 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 SLFN13Q68D06 897 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 MFSD6Q6ZSS7 791 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 ABRAQ8N0Z2 381 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 FEM1BQ9UK73 627 aa12.94□□□□□ -0.34
SPG11-216ENST00000559347 SMCHD1A6NHR9 2005 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 ZNF213O14771 459 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 FARP2O94887 1054 aaPredicted RBP12.93□□□□□ -0.34
SPG11-216ENST00000559347 CAPN2P17655 700 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 COPB2P35606 906 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 STAT3P40763 770 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 STAT2P52630 851 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 KIFC2Q96AC6 838 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 TEX13BQ9BXU2 312 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 RNF41Q9H4P4 317 aaPredicted RBP12.93□□□□□ -0.34
SPG11-216ENST00000559347 SLC38A10Q9HBR0 1119 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 TCP11L1Q9NUJ3 509 aa12.93□□□□□ -0.34
SPG11-216ENST00000559347 TMEM232C9JQI7 657 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 ATP2A1O14983 1001 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 COBLO75128 1261 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 FCER1AP12319 257 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 CHMLP26374 656 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 CCND3P30281 292 aaPredicted RBP12.92□□□□□ -0.34
SPG11-216ENST00000559347 SLC1A4P43007 532 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 IMMTQ16891 758 aaKnown RBP12.92□□□□□ -0.34
SPG11-216ENST00000559347 OLFML2BQ68BL8 750 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 SNRNP48Q6IEG0 339 aaKnown RBP12.92□□□□□ -0.34
SPG11-216ENST00000559347 RCSD1Q6JBY9 416 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 CENPQQ7L2Z9 268 aaPredicted RBP12.92□□□□□ -0.34
SPG11-216ENST00000559347 DPP9Q86TI2 863 aa12.92□□□□□ -0.34
SPG11-216ENST00000559347 ISY1Q9ULR0 285 aaKnown RBP12.92□□□□□ -0.34
SPG11-216ENST00000559347 CEP290O15078 2479 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 PLA2G6O60733 806 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 TFRCP02786 760 aaKnown RBP12.91□□□□□ -0.34
SPG11-216ENST00000559347 TOP1P11387 765 aaKnown RBP12.91□□□□□ -0.34
SPG11-216ENST00000559347 CYBAP13498 195 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 MCCP23508 829 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 CYP2C19P33261 490 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 NT5C2P49902 561 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 OAZ1P54368 228 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 MFSD14CQ5VZR4 134 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 KCTD1Q719H9 257 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.91□□□□□ -0.34
SPG11-216ENST00000559347 FAM160B2Q86V87 743 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 ANKLE1Q8NAG6 615 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 DCAF4Q8WV16 495 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 ESR2Q92731 530 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 MAML3Q96JK9 1138 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 MMP19Q99542 508 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 TMEM47Q9BQJ4 181 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 RIPK3Q9Y572 518 aa12.91□□□□□ -0.34
SPG11-216ENST00000559347 SGSM2O43147 1006 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 ZBED4O75132 1171 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 KDM4AO75164 1064 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 PGK2P07205 417 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 FDX1P10109 184 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 MNX1P50219 401 aaPredicted RBP12.9□□□□□ -0.34
SPG11-216ENST00000559347 IKQ13123 557 aaPredicted RBP12.9□□□□□ -0.34
SPG11-216ENST00000559347 KCTD2Q14681 263 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 CCDC96Q2M329 555 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 CPXCR1Q8N123 301 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 TRPV1Q8NER1 839 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 DIS3LQ8TF46 1054 aaKnown RBP12.9□□□□□ -0.34
SPG11-216ENST00000559347 CHURC1Q8WUH1 139 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 RUFY2Q8WXA3 655 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 CHMP4CQ96CF2 233 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 RAVER2Q9HCJ3 691 aaKnown RBP12.9□□□□□ -0.34
SPG11-216ENST00000559347 SLC5A4Q9NY91 659 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 CTNNA3Q9UI47 895 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 OGDHLQ9ULD0 1010 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 MTMR7Q9Y216 660 aa12.9□□□□□ -0.34
SPG11-216ENST00000559347 CTDP1Q9Y5B0 961 aaPredicted RBP12.9□□□□□ -0.34
SPG11-216ENST00000559347 ZNF536O15090 1300 aa12.89□□□□□ -0.35
SPG11-216ENST00000559347 RANBP2P49792 3224 aaKnown RBP12.89□□□□□ -0.35
SPG11-216ENST00000559347 B4E1Z4 1266 aa12.89□□□□□ -0.35
SPG11-216ENST00000559347 LHX8Q68G74 356 aa12.89□□□□□ -0.35
SPG11-216ENST00000559347 SKAP1Q86WV1 359 aa12.89□□□□□ -0.35
SPG11-216ENST00000559347 TTC14Q96N46 770 aa12.89□□□□□ -0.35
SPG11-216ENST00000559347 ZKSCAN3Q9BRR0 538 aa12.89□□□□□ -0.35
SPG11-216ENST00000559347 PRR12Q9ULL5 1215 aa12.89□□□□□ -0.35
SPG11-216ENST00000559347 DNAJC25-GNG10A0A024R161 153 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 SNHG28P0DPA3 235 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 PDHBP11177 359 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 PTH1RQ03431 593 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 ZNF792Q3KQV3 632 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 PAWRQ96IZ0 340 aaKnown RBP12.88□□□□□ -0.35
SPG11-216ENST00000559347 HTATIP2Q9BUP3 242 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 CNNM2Q9H8M5 875 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 FBXO40Q9UH90 709 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 DDX20Q9UHI6 824 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms