RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	NLRP5	P59047	1200 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	MEA1	Q16626	185 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	CTR9	Q6PD62	1173 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	CCDC170	Q8IYT3	715 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	NOA1	Q8NC60	698 aa	Known RBP	18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	RIOK1	Q9BRS2	568 aa	Known RBP	18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	MAGEF1	Q9HAY2	307 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	ITGB4	P16144	1822 aa		18.29	■□□□□ 0.52
SHMT2-231	ENST00000557433	PRDM1	O75626	825 aa		18.28	■□□□□ 0.52
SHMT2-231	ENST00000557433	PFKFB3	Q16875	520 aa	Predicted RBP	18.28	■□□□□ 0.52
SHMT2-231	ENST00000557433	ZNF507	Q8TCN5	953 aa		18.28	■□□□□ 0.52
SHMT2-231	ENST00000557433	BLZF1	Q9H2G9	400 aa		18.28	■□□□□ 0.52
SHMT2-231	ENST00000557433	MAGEC2	Q9UBF1	373 aa	Predicted RBP	18.28	■□□□□ 0.52
SHMT2-231	ENST00000557433	REXO2	Q9Y3B8	237 aa	Known RBP	18.28	■□□□□ 0.52
SHMT2-231	ENST00000557433	ABCA3	Q99758	1704 aa		18.28	■□□□□ 0.52
SHMT2-231	ENST00000557433	IPO7	O95373	1038 aa	Known RBP	18.27	■□□□□ 0.52
SHMT2-231	ENST00000557433	STAT6	P42226	847 aa		18.27	■□□□□ 0.52
SHMT2-231	ENST00000557433	CDK17	Q00537	523 aa		18.27	■□□□□ 0.52
SHMT2-231	ENST00000557433	MTR	Q99707	1265 aa		18.27	■□□□□ 0.52
SHMT2-231	ENST00000557433	EFCC1	Q9HA90	598 aa		18.27	■□□□□ 0.52
SHMT2-231	ENST00000557433	ZNHIT6	Q9NWK9	470 aa	Known RBP	18.27	■□□□□ 0.52
SHMT2-231	ENST00000557433	GUCA1B	Q9UMX6	200 aa		18.27	■□□□□ 0.52
SHMT2-231	ENST00000557433	MYH8	P13535	1937 aa		18.27	■□□□□ 0.52
SHMT2-231	ENST00000557433	TTC26	A0AVF1	554 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	WNT7A	O00755	349 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	PSMA7	O14818	248 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	KIF5B	P33176	963 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	PRCP	P42785	496 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	CCDC70	Q6NSX1	233 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	SDR42E1	Q8WUS8	393 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	TSGA10	Q9BZW7	698 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	CUEDC2	Q9H467	287 aa		18.27	■□□□□ 0.51
SHMT2-231	ENST00000557433	LRRIQ3	A6PVS8	624 aa	Predicted RBP	18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	RNF225	M0QZC1	329 aa	Predicted RBP	18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	SF3B2	Q13435	895 aa	Known RBP	18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	CCDC122	Q5T0U0	273 aa		18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	NCAPH2	Q6IBW4	605 aa		18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	PIK3AP1	Q6ZUJ8	805 aa		18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	FAM114A1	Q8IWE2	563 aa		18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	DHTKD1	Q96HY7	919 aa	Predicted RBP	18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	CHP1	Q99653	195 aa		18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	DISC1	Q9NRI5	854 aa		18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	LAMB2	P55268	1798 aa		18.26	■□□□□ 0.51
SHMT2-231	ENST00000557433	EIF3CL	B5ME19	914 aa	Known RBP	18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	LAD1	O00515	517 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	N4BP1	O75113	896 aa	Known RBP	18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	SRGN	P10124	158 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	CDC25A	P30304	524 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	ITIH3	Q06033	890 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	FIGN	Q5HY92	759 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	SUSD4	Q5VX71	490 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	IRF2BP1	Q8IU81	584 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	AFAP1L1	Q8TED9	768 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	CCDC47	Q96A33	483 aa	Known RBP	18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	EIF3C	Q99613	913 aa	Known RBP	18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	RHOBTB3	O94955	611 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	ABL1	P00519	1130 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	MCM7	P33993	719 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	CHRND	Q07001	517 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	GALNT17	Q6IS24	598 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	KIAA1328	Q86T90	577 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	FNBP4	Q8N3X1	1017 aa	Predicted RBP	18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	SRBD1	Q8N5C6	995 aa	Known RBP	18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	C4orf32	Q8N8J7	132 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	COG1	Q8WTW3	980 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	STAM	Q92783	540 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	TRERF1	Q96PN7	1200 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	SLC4A9	Q96Q91	983 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	CCSER1	Q9C0I3	900 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	FAM107B	Q9H098	131 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	SUGCT	Q9HAC7	445 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433	MYH13	Q9UKX3	1938 aa		18.25	■□□□□ 0.51
SHMT2-231	ENST00000557433		A0A1W2PQJ5	194 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	BICDL2	A1A5D9	508 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	RNF40	O75150	1001 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	HERVK_113	P62684	666 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	UBE4A	Q14139	1066 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	IL17A	Q16552	155 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	JAKMIP2	Q96AA8	810 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	FAM204A	Q9H8W3	233 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	HPCAL4	Q9UM19	191 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	SLIT2	O94813	1529 aa		18.24	■□□□□ 0.51
SHMT2-231	ENST00000557433	PPFIA4	O75335	1185 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	EIF5	P55010	431 aa	Known RBP	18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	ZBED6	P86452	979 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	ADGRA1	Q86SQ6	560 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	BLID	Q8IZY5	108 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	GIMAP8	Q8ND71	665 aa	Predicted RBP	18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	PURB	Q96QR8	312 aa	Known RBP	18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	TRIM34	Q9BYJ4	488 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	EXOC1	Q9NV70	894 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	GDA	Q9Y2T3	454 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	PRPF6	O94906	941 aa	Known RBP	18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	MAGEA9	P43362	315 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	WDR59	Q6PJI9	974 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	DTHD1	Q6ZMT9	781 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	TRIM47	Q96LD4	638 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	TTYH3	Q9C0H2	523 aa		18.23	■□□□□ 0.51
SHMT2-231	ENST00000557433	ABCF2	Q9UG63	623 aa		18.23	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms