RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MYO1BO43795 1136 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 DCAF4Q8WV16 495 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 JDP2Q8WYK2 163 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 GLT8D2Q9H1C3 349 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 TAOK3Q9H2K8 898 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 SPON1Q9HCB6 807 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 CLIP2Q9UDT6 1046 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 KCNH3Q9ULD8 1083 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 PCDHB6Q9Y5E3 794 aa14.41□□□□□ -0.1
SHMT2-229ENST00000557348 hCG_1642624A0A1W2PR95 340 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 STXBP3O00186 592 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 PSMD14O00487 310 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 MPHOSPH10O00566 681 aaKnown RBP14.4□□□□□ -0.1
SHMT2-229ENST00000557348 CYTH3O43739 400 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 NAPAP54920 295 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 ATP2C1P98194 919 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-229ENST00000557348 ZNF543Q08ER8 600 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 TNIP1Q15025 636 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 WWC2Q6AWC2 1192 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 KIAA1524Q8TCG1 905 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 SHISA4Q96DD7 197 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 OGFRQ9NZT2 677 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 LTBP3Q9NS15 1303 aa14.4□□□□□ -0.1
SHMT2-229ENST00000557348 GREB1LQ9C091 1923 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-229ENST00000557348 GOLGA6L19H0YKK7 550 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 RPS12P25398 132 aaKnown RBP14.39□□□□□ -0.11
SHMT2-229ENST00000557348 PIK3AP1Q6ZUJ8 805 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 FAM151AQ8WW52 585 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 BPIFA3Q9BQP9 254 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 ZNF277Q9NRM2 450 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-229ENST00000557348 MYH8P13535 1937 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 DDTLA6NHG4 134 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-229ENST00000557348 USP17L5A8MUK1 530 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 TCP10Q12799 353 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 USP17L2Q6R6M4 530 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 KRBA2Q6ZNG9 492 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 FAM83AQ86UY5 434 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 TEX2Q8IWB9 1127 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 TDRD3Q9H7E2 651 aaKnown RBP14.39□□□□□ -0.11
SHMT2-229ENST00000557348 PPP1R1BQ9UD71 204 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-229ENST00000557348 PAXBP1Q9Y5B6 917 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 ADAMTSL1Q8N6G6 1762 aa14.39□□□□□ -0.11
SHMT2-229ENST00000557348 PNMA6FA0A0J9YX94 578 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 M0R2N6 131 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 ZBTB7AO95365 584 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 ADCY5O95622 1261 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 TPM4P67936 248 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 TRAF1Q13077 416 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 ABCB5Q2M3G0 1257 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 SPDYE2Q495Y8 402 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 RBM26Q5T8P6 1007 aaKnown RBP14.38□□□□□ -0.11
SHMT2-229ENST00000557348 MCTP2Q6DN12 878 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 CIAPIN1Q6FI81 312 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-229ENST00000557348 ZNF710Q8N1W2 664 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 CNNM3Q8NE01 707 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 GPKOWQ92917 476 aaPredicted RBP eCLIP14.38□□□□□ -0.11
SHMT2-229ENST00000557348 CSRNP1Q96S65 589 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 DNAJC18Q9H819 358 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 CBX8Q9HC52 389 aa14.38□□□□□ -0.11
SHMT2-229ENST00000557348 BECN2A8MW95 431 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 RAD17O75943 681 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 GOLGA8HP0CJ92 632 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 LONP1P36776 959 aaKnown RBP14.37□□□□□ -0.11
SHMT2-229ENST00000557348 TXLNAP40222 546 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 ICA1Q05084 483 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 LRRC47Q8N1G4 583 aaKnown RBP14.37□□□□□ -0.11
SHMT2-229ENST00000557348 GMCL1P1Q8NEA9 526 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 PRMT6Q96LA8 375 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-229ENST00000557348 CLIC6Q96NY7 704 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 DNAJC25Q9H1X3 360 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 CGNQ9P2M7 1197 aaKnown RBP14.37□□□□□ -0.11
SHMT2-229ENST00000557348 ZNF70Q9UC06 446 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-229ENST00000557348 TUBE1Q9UJT0 475 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 MTMR7Q9Y216 660 aa14.37□□□□□ -0.11
SHMT2-229ENST00000557348 SMCO2A6NFE2 343 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 TBC1D12O60347 775 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 ATP2B1P20020 1258 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 PRPHP41219 470 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 TNNI2P48788 182 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 NLRP12P59046 1061 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 NONOQ15233 471 aaKnown RBP eCLIP14.36□□□□□ -0.11
SHMT2-229ENST00000557348 CCDC96Q2M329 555 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 SH3BP5LQ7L8J4 393 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 ZFPM1Q8IX07 1006 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 TRIML1Q8N9V2 468 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 DACH1Q9UI36 760 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 PCDHA6Q9UN73 950 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 PCDHA8Q9Y5H6 950 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 CACNB3P54284 484 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 PTGDRQ13258 359 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 TNFAIP1Q13829 316 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 SLC35G1Q2M3R5 365 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 HOMER1Q86YM7 354 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 REXO1Q8N1G1 1221 aaKnown RBP14.36□□□□□ -0.11
SHMT2-229ENST00000557348 GMCL1Q96IK5 515 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 PIGSQ96S52 555 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 NAP1L4Q99733 375 aaKnown RBP14.36□□□□□ -0.11
SHMT2-229ENST00000557348 CSRNP2Q9H175 543 aa14.36□□□□□ -0.11
SHMT2-229ENST00000557348 SMTNL1A8MU46 457 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms