RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 CCL15Q16663 113 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 KIAA1755Q5JYT7 1200 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 FAM83BQ5T0W9 1011 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 FAM160B2Q86V87 743 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 TANGO6Q9C0B7 1094 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 RPAP3Q9H6T3 665 aaPredicted RBP11.31□□□□□ -0.6
TMEM260-213ENST00000556929 HPS5Q9UPZ3 1129 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 COL11A1P12107 1806 aaPredicted RBP11.3□□□□□ -0.6
TMEM260-213ENST00000556929 TESPA1A2RU30 521 aaPredicted RBP11.3□□□□□ -0.6
TMEM260-213ENST00000556929 FAM155AB1AL88 458 aaPredicted RBP11.3□□□□□ -0.6
TMEM260-213ENST00000556929 CDC27P30260 824 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 ADD1P35611 737 aaKnown RBP11.3□□□□□ -0.6
TMEM260-213ENST00000556929 C1QTNF8P60827 252 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 NOGQ13253 232 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 GRM1Q13255 1194 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 CYP4F22Q6NT55 531 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 CATSPERGQ6ZRH7 1159 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 CCDC83Q8IWF9 413 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 PLCD3Q8N3E9 789 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 STAG2Q8N3U4 1231 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 NECAB1Q8N987 351 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 MS4A4AQ96JQ5 239 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 PHF12Q96QT6 1004 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 NUP88Q99567 741 aaPredicted RBP11.3□□□□□ -0.6
TMEM260-213ENST00000556929 NCOA5Q9HCD5 579 aaKnown RBP11.3□□□□□ -0.6
TMEM260-213ENST00000556929 PNMA3Q9UL41 463 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 AGTPBP1Q9UPW5 1226 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.3□□□□□ -0.6
TMEM260-213ENST00000556929 RLFQ13129 1914 aa11.3□□□□□ -0.6
TMEM260-213ENST00000556929 FLOT1O75955 427 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 HSP90AA1P07900 732 aaKnown RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 FDX1P10109 184 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 HOXA7P31268 230 aaPredicted RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 AKAP17AQ02040 695 aaKnown RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 COG2Q14746 738 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 TREML2Q5T2D2 321 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 OTUD7BQ6GQQ9 843 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 BTNL9Q6UXG8 535 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 TMTC3Q6ZXV5 915 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 RASGRP2Q7LDG7 609 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 ANKRD23Q86SG2 305 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 TRIM22Q8IYM9 498 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 PRPF38AQ8NAV1 312 aaKnown RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 CAPNS2Q96L46 248 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 SLF1Q9BQI6 1058 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 LLPHQ9BRT6 129 aaKnown RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 UBA5Q9GZZ9 404 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 FAM217BQ9NTX9 383 aaPredicted RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 RBM27Q9P2N5 1060 aaKnown RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 DAXXQ9UER7 740 aaPredicted RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 SLC45A1Q9Y2W3 748 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 CTDP1Q9Y5B0 961 aaPredicted RBP11.29□□□□□ -0.6
TMEM260-213ENST00000556929 MYPNQ86TC9 1320 aa11.29□□□□□ -0.6
TMEM260-213ENST00000556929 PLEKHA8P1O95397 391 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 HSPA6P17066 643 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 IFNAR1P17181 557 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 SLC16A2P36021 539 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 IRX3P78415 501 aaPredicted RBP11.28□□□□□ -0.6
TMEM260-213ENST00000556929 KIF23Q02241 960 aaPredicted RBP11.28□□□□□ -0.6
TMEM260-213ENST00000556929 SSRP1Q08945 709 aaKnown RBP11.28□□□□□ -0.6
TMEM260-213ENST00000556929 CUL4AQ13619 759 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 MOGSQ13724 837 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 NTRK3Q16288 839 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 SYDE2Q5VT97 1194 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 TTBK2Q6IQ55 1244 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 GPAT2Q6NUI2 795 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 ADGRF4Q8IZF3 695 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 CMTR1Q8N1G2 835 aaKnown RBP11.28□□□□□ -0.6
TMEM260-213ENST00000556929 CCDC82Q8N4S0 544 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 SRBD1Q8N5C6 995 aaKnown RBP11.28□□□□□ -0.6
TMEM260-213ENST00000556929 BRI3BPQ8WY22 251 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 SPZ1Q9BXG8 430 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 RNF26Q9BY78 433 aaPredicted RBP11.28□□□□□ -0.6
TMEM260-213ENST00000556929 RIOX1Q9H6W3 641 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 VAT1LQ9HCJ6 419 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 ZCCHC17Q9NP64 241 aaKnown RBP11.28□□□□□ -0.6
TMEM260-213ENST00000556929 HOXC10Q9NYD6 342 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 PRR12Q9ULL5 1215 aa11.28□□□□□ -0.6
TMEM260-213ENST00000556929 WDR33Q9C0J8 1336 aaKnown RBP11.28□□□□□ -0.6
TMEM260-213ENST00000556929 A0A0G2JMZ2 1700 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 BTBD19C9JJ37 291 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 PDHXO00330 501 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 PRPF3O43395 683 aaKnown RBP11.27□□□□□ -0.61
TMEM260-213ENST00000556929 ZBED4O75132 1171 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 TM4SF4P48230 202 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 HMGN5P82970 282 aaKnown RBP11.27□□□□□ -0.61
TMEM260-213ENST00000556929 TRAF1Q13077 416 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 GTF3C2Q8WUA4 911 aaPredicted RBP11.27□□□□□ -0.61
TMEM260-213ENST00000556929 KIFC2Q96AC6 838 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 RRP36Q96EU6 259 aaKnown RBP11.27□□□□□ -0.61
TMEM260-213ENST00000556929 INTS4Q96HW7 963 aaKnown RBP11.27□□□□□ -0.61
TMEM260-213ENST00000556929 SLC26A6Q9BXS9 759 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 SEC63Q9UGP8 760 aaKnown RBP11.27□□□□□ -0.61
TMEM260-213ENST00000556929 PPP1R9AQ9ULJ8 1098 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 SMC3Q9UQE7 1217 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 KIF3AQ9Y496 699 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 CNTNAP5Q8WYK1 1306 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 STK36Q9NRP7 1315 aa11.27□□□□□ -0.61
TMEM260-213ENST00000556929 DEXIO95424 95 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 FMNL1O95466 1100 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms