RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 PIGSQ96S52 555 aa11.52□□□□□ -0.56
TMEM260-211ENST00000556648 MTRQ99707 1265 aa11.52□□□□□ -0.56
TMEM260-211ENST00000556648 BLZF1Q9H2G9 400 aa11.52□□□□□ -0.56
TMEM260-211ENST00000556648 CCDC194A0A1B0GVG4 234 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 COBLO75128 1261 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 SERPINC1P01008 464 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 PDHBP11177 359 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 SHMT1P34896 483 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 NAPAP54920 295 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 ZNF772Q68DY9 489 aaPredicted RBP11.52□□□□□ -0.57
TMEM260-211ENST00000556648 PDXDC2PQ6P474 469 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 CCDC148Q8NFR7 591 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 MTMR4Q9NYA4 1195 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 SUGT1Q9Y2Z0 365 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 NFE2L3Q9Y4A8 694 aa11.52□□□□□ -0.57
TMEM260-211ENST00000556648 GREB1LQ9C091 1923 aaPredicted RBP11.51□□□□□ -0.57
TMEM260-211ENST00000556648 FAM196BA6NMK8 535 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 G3V3G9 751 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 CRKP46108 304 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 UBASH3AP57075 661 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 MAPK8IP2Q13387 824 aaPredicted RBP11.51□□□□□ -0.57
TMEM260-211ENST00000556648 DCAF8Q5TAQ9 597 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 KANK3Q6NY19 840 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 KIAA0825Q8IV33 1275 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 MLKLQ8NB16 471 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 LZTS2Q9BRK4 669 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 TMEM260Q9NX78 707 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 IMPACTQ9P2X3 320 aa11.51□□□□□ -0.57
TMEM260-211ENST00000556648 NPM3O75607 178 aaKnown RBP11.5□□□□□ -0.57
TMEM260-211ENST00000556648 ZNF18P17022 549 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 STX17P56962 302 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 KARSQ15046 597 aaKnown RBP11.5□□□□□ -0.57
TMEM260-211ENST00000556648 CFAP100Q494V2 611 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 KLHL10Q6JEL2 608 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 TRIML1Q8N9V2 468 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 TEKT1Q969V4 418 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 RRP36Q96EU6 259 aaKnown RBP11.5□□□□□ -0.57
TMEM260-211ENST00000556648 GPCPD1Q9NPB8 672 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 SAMSN1Q9NSI8 373 aaKnown RBP11.5□□□□□ -0.57
TMEM260-211ENST00000556648 SMCO2A6NFE2 343 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 NEMFO60524 1076 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 GSDMDP57764 484 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 CUL4BQ13620 913 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 FLAD1Q8NFF5 587 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 MYRIPQ8NFW9 859 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 LRRC15Q8TF66 581 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 ZMYND12Q9H0C1 365 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 DNAJC18Q9H819 358 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 TRMT1Q9NXH9 659 aaKnown RBP11.5□□□□□ -0.57
TMEM260-211ENST00000556648 SERPINB13Q9UIV8 391 aa11.5□□□□□ -0.57
TMEM260-211ENST00000556648 ECE2O60344 883 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 RBM10P98175 930 aaKnown RBP11.49□□□□□ -0.57
TMEM260-211ENST00000556648 TCP10Q12799 353 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 TPD52L1Q16890 204 aaPredicted RBP11.49□□□□□ -0.57
TMEM260-211ENST00000556648 TTBK2Q6IQ55 1244 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 HHIPL2Q6UWX4 724 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 VSTM4Q8IW00 320 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 ENOX1Q8TC92 643 aaKnown RBP11.49□□□□□ -0.57
TMEM260-211ENST00000556648 COA7Q96BR5 231 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 PLIN2Q99541 437 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 MYH4Q9Y623 1939 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 SYNRGQ9UMZ2 1314 aa11.49□□□□□ -0.57
TMEM260-211ENST00000556648 PPP1R3GB7ZBB8 358 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 RIOK3O14730 519 aaKnown RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 AOC3Q16853 763 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 DACT2Q5SW24 774 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 JAKMIP3Q5VZ66 844 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 ARL6IP4Q66PJ3 421 aaKnown RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 STYK1Q6J9G0 422 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 CCDC150Q8NCX0 1101 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 PRIMPOLQ96LW4 560 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 RIOX1Q9H6W3 641 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 BIN2Q9UBW5 565 aaPredicted RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 SEC63Q9UGP8 760 aaKnown RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 CTNND2Q9UQB3 1225 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 RGPD3A6NKT7 1758 aaPredicted RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 RGPD4Q7Z3J3 1758 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 MPHOSPH10O00566 681 aaKnown RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 CBFA2T2O43439 604 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 PPP1R11O60927 126 aaPredicted RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 TNNT1P13805 278 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 RXRBP28702 533 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 LONP1P36776 959 aaKnown RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 ATP2B2Q01814 1243 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 EZH2Q15910 746 aaKnown RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 NAALADL2Q58DX5 795 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 GALNT17Q6IS24 598 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 SH3BP5LQ7L8J4 393 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 CCAR2Q8N163 923 aaKnown RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 IQUBQ8NA54 791 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 ZDHHC15Q96MV8 337 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 TMX4Q9H1E5 349 aaPredicted RBP11.48□□□□□ -0.57
TMEM260-211ENST00000556648 DACH1Q9UI36 760 aa11.48□□□□□ -0.57
TMEM260-211ENST00000556648 DDTLA6NHG4 134 aaPredicted RBP11.47□□□□□ -0.57
TMEM260-211ENST00000556648 H0YIN7 160 aa11.47□□□□□ -0.57
TMEM260-211ENST00000556648 GTPBP6O43824 516 aaPredicted RBP11.47□□□□□ -0.57
TMEM260-211ENST00000556648 TTLL1O95922 423 aa11.47□□□□□ -0.57
TMEM260-211ENST00000556648 SNHG28P0DPA3 235 aa11.47□□□□□ -0.57
TMEM260-211ENST00000556648 SFPQP23246 707 aaKnown RBP eCLIP11.47□□□□□ -0.57
TMEM260-211ENST00000556648 SLC16A2P36021 539 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms