RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CAPN2P17655 700 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 GYS2P54840 703 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 SMC1AQ14683 1233 aaKnown RBP16.65■□□□□ 0.26
CUX1-215ENST00000556210 NTRK3Q16288 839 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 TMTC3Q6ZXV5 915 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 REXO1Q8N1G1 1221 aaKnown RBP16.65■□□□□ 0.26
CUX1-215ENST00000556210 WDR24Q96S15 920 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 PTPAQ15257 358 aa16.64■□□□□ 0.25
CUX1-215ENST00000556210 KCTD1Q719H9 257 aa16.64■□□□□ 0.25
CUX1-215ENST00000556210 NWD1Q149M9 1564 aa16.64■□□□□ 0.25
CUX1-215ENST00000556210 CYP27A1Q02318 531 aa16.64■□□□□ 0.25
CUX1-215ENST00000556210 SLF2Q8IX21 1173 aa16.64■□□□□ 0.25
CUX1-215ENST00000556210 TSG101Q99816 390 aa16.64■□□□□ 0.25
CUX1-215ENST00000556210 ATP8A2Q9NTI2 1148 aa16.64■□□□□ 0.25
CUX1-215ENST00000556210 PRPF3O43395 683 aaKnown RBP16.64■□□□□ 0.25
CUX1-215ENST00000556210 MAEAQ7L5Y9 396 aa16.64■□□□□ 0.25
CUX1-215ENST00000556210 TYW1BQ6NUM6 668 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 SLC35F6Q8N357 371 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 NSUN4Q96CB9 384 aaKnown RBP16.63■□□□□ 0.25
CUX1-215ENST00000556210 ABCC12Q96J65 1359 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 SV2BQ7L1I2 683 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 NBPF11Q86T75 865 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 LRRN4CLQ8ND94 238 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 GJA10Q969M2 543 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 IL17RAQ96F46 866 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 ZCCHC17Q9NP64 241 aaKnown RBP16.63■□□□□ 0.25
CUX1-215ENST00000556210 USP8P40818 1118 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 HNRNPH2P55795 449 aaKnown RBP16.63■□□□□ 0.25
CUX1-215ENST00000556210 CEP89Q96ST8 783 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 USP40Q9NVE5 1235 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 TFR2Q9UP52 801 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 NFAT5O94916 1531 aa16.63■□□□□ 0.25
CUX1-215ENST00000556210 TMCO5BA8MYB1 307 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 TRIM37O94972 964 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 KIF5AQ12840 1032 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 ALX1Q15699 326 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 RBM43Q6ZSC3 357 aaKnown RBP16.62■□□□□ 0.25
CUX1-215ENST00000556210 SLC51AQ86UW1 340 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 SPICE1Q8N0Z3 855 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 ENOX1Q8TC92 643 aaKnown RBP16.62■□□□□ 0.25
CUX1-215ENST00000556210 KANSL2Q9H9L4 492 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 ZBTB21Q9ULJ3 1066 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 UBE2SQ16763 222 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 ZFYVE27Q5T4F4 411 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 TBCKQ8TEA7 893 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 TCRBV5S4A2TA0A5A2 114 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 USO1O60763 962 aaKnown RBP16.62■□□□□ 0.25
CUX1-215ENST00000556210 COPB1P53618 953 aaKnown RBP16.62■□□□□ 0.25
CUX1-215ENST00000556210 CALCRLQ16602 461 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 RBM26Q5T8P6 1007 aaKnown RBP16.62■□□□□ 0.25
CUX1-215ENST00000556210 VEZTQ9HBM0 779 aa16.62■□□□□ 0.25
CUX1-215ENST00000556210 CYLC1P35663 651 aaPredicted RBP16.61■□□□□ 0.25
CUX1-215ENST00000556210 PPP2R5BQ15173 497 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 DBNDD1Q9H9R9 158 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 SALL1Q9NSC2 1324 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 PRPF4BQ13523 1007 aaKnown RBP16.61■□□□□ 0.25
CUX1-215ENST00000556210 KRT31Q15323 416 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 NYAP1Q6ZVC0 841 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 C2CD5Q86YS7 1000 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 FNBP4Q8N3X1 1017 aaPredicted RBP16.61■□□□□ 0.25
CUX1-215ENST00000556210 MXD3Q9BW11 206 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 OSBPL5Q9H0X9 879 aaPredicted RBP16.61■□□□□ 0.25
CUX1-215ENST00000556210 TMEM260Q9NX78 707 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 EFCAB8A8MWE9 144 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 FGFR2P21802 821 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 HERC4Q5GLZ8 1057 aaPredicted RBP16.61■□□□□ 0.25
CUX1-215ENST00000556210 VGLL2Q8N8G2 317 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 SPAG5Q96R06 1193 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 GBP3Q9H0R5 595 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 SAMM50Q9Y512 469 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 STX10O60499 249 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 DDAH1O94760 285 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 ZSCAN26Q16670 478 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 DCAF17Q5H9S7 520 aaPredicted RBP16.61■□□□□ 0.25
CUX1-215ENST00000556210 GSDMAQ96QA5 445 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 TMEM47Q9BQJ4 181 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 RSPH14Q9UHP6 348 aa16.61■□□□□ 0.25
CUX1-215ENST00000556210 SLC1A4P43007 532 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 NCAPHQ15003 741 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 CYP26C1Q6V0L0 522 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 MAP3K14Q99558 947 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 NAPGQ99747 312 aaPredicted RBP16.6■□□□□ 0.25
CUX1-215ENST00000556210 PYM1Q9BRP8 204 aaKnown RBP16.6■□□□□ 0.25
CUX1-215ENST00000556210 KRT86O43790 486 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 GTPBP6O43824 516 aaPredicted RBP16.6■□□□□ 0.25
CUX1-215ENST00000556210 SERPINB2P05120 415 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 PLCG1P19174 1290 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 PRCPP42785 496 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 CYP4A11Q02928 519 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 RRAGAQ7L523 313 aa16.6■□□□□ 0.25
CUX1-215ENST00000556210 CT47A1Q5JQC4 288 aaPredicted RBP16.59■□□□□ 0.25
CUX1-215ENST00000556210 TFRCP02786 760 aaKnown RBP16.59■□□□□ 0.25
CUX1-215ENST00000556210 HLTFQ14527 1009 aaKnown RBP eCLIP16.59■□□□□ 0.25
CUX1-215ENST00000556210 PCDHA4Q9UN74 947 aa16.59■□□□□ 0.25
CUX1-215ENST00000556210 CAMTA1Q9Y6Y1 1673 aa16.59■□□□□ 0.25
CUX1-215ENST00000556210 USP17L5A8MUK1 530 aa16.59■□□□□ 0.25
CUX1-215ENST00000556210 OR52Z1P0C646 297 aa16.59■□□□□ 0.25
CUX1-215ENST00000556210 CDK8P49336 464 aa16.59■□□□□ 0.25
CUX1-215ENST00000556210 UBXN2AP68543 259 aa16.59■□□□□ 0.25
CUX1-215ENST00000556210 RAPGEF1Q13905 1077 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms