RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 SCRN1Q12765 414 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 STK3Q13188 491 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 TMTC3Q6ZXV5 915 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 RASGRP2Q7LDG7 609 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 FAM43AQ8N2R8 423 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 SRBD1Q8N5C6 995 aaKnown RBP11.86□□□□□ -0.51
SYNE2-215ENST00000554997 P2RX7Q99572 595 aaKnown RBP11.86□□□□□ -0.51
SYNE2-215ENST00000554997 SLF1Q9BQI6 1058 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 ASCC2Q9H1I8 757 aaPredicted RBP11.86□□□□□ -0.51
SYNE2-215ENST00000554997 RIOX1Q9H6W3 641 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 PNMA3Q9UL41 463 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 NID2Q14112 1375 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 OTOFQ9HC10 1997 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 MYPNQ86TC9 1320 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 IGF2BP3O00425 579 aaKnown RBP eCLIP11.85□□□□□ -0.51
SYNE2-215ENST00000554997 LARGE1O95461 756 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 ALDH1A1P00352 501 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 IFNAR1P17181 557 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 SLC16A2P36021 539 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 FUT2Q10981 343 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 NTRK3Q16288 839 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 CPLX2Q6PUV4 134 aaKnown RBP11.85□□□□□ -0.51
SYNE2-215ENST00000554997 LBX2Q6XYB7 198 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 NBPF11Q86T75 865 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 ADGRF4Q8IZF3 695 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 DNAJC5GQ8N7S2 189 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 NECAB1Q8N987 351 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 GTF3C6Q969F1 213 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 KIFC2Q96AC6 838 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 SPZ1Q9BXG8 430 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 NCOA5Q9HCD5 579 aaKnown RBP11.85□□□□□ -0.51
SYNE2-215ENST00000554997 VAT1LQ9HCJ6 419 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 TSHZ2Q9NRE2 1034 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 FBXO28Q9NVF7 368 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 PPP1R9AQ9ULJ8 1098 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 PRR12Q9ULL5 1215 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 ISY1Q9ULR0 285 aaKnown RBP11.85□□□□□ -0.51
SYNE2-215ENST00000554997 MYH8P13535 1937 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 PHIPQ8WWQ0 1821 aa11.85□□□□□ -0.51
SYNE2-215ENST00000554997 ATAD5Q96QE3 1844 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 K7ELQ4 463 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-215ENST00000554997 CPLX1O14810 134 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 CYTH3O43739 400 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 ZBED4O75132 1171 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 PLEKHA8P1O95397 391 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 IRX3P78415 501 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-215ENST00000554997 IKQ13123 557 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-215ENST00000554997 SLC35G1Q2M3R5 365 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 SYDE2Q5VT97 1194 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 CMTR1Q8N1G2 835 aaKnown RBP11.84□□□□□ -0.51
SYNE2-215ENST00000554997 CCDC82Q8N4S0 544 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 MTMR8Q96EF0 704 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 LLPHQ9BRT6 129 aaKnown RBP11.84□□□□□ -0.51
SYNE2-215ENST00000554997 JMJD4Q9H9V9 463 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 V9GY48 417 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-215ENST00000554997 PCNTO95613 3336 aa11.84□□□□□ -0.51
SYNE2-215ENST00000554997 SPDYE16A6NNV3 312 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-215ENST00000554997 VWA5AO00534 786 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 PRPF3O43395 683 aaKnown RBP11.83□□□□□ -0.52
SYNE2-215ENST00000554997 CDKL5O76039 1030 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 CTDNEP1O95476 244 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 CYP2C8P10632 490 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 HERVK_113P62684 666 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 CACNB1Q02641 598 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-215ENST00000554997 CUL4AQ13619 759 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 HSCBQ8IWL3 235 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 MB21D1Q8N884 522 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 GTF3C2Q8WUA4 911 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-215ENST00000554997 RNF39Q9H2S5 420 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 RANBP17Q9H2T7 1088 aaKnown RBP11.83□□□□□ -0.52
SYNE2-215ENST00000554997 CPVLQ9H3G5 476 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 SLC38A10Q9HBR0 1119 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 RBPJLQ9UBG7 517 aa11.83□□□□□ -0.52
SYNE2-215ENST00000554997 RBM19Q9Y4C8 960 aaKnown RBP11.83□□□□□ -0.52
SYNE2-215ENST00000554997 PNMA6FA0A0J9YX94 578 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 ATP2A1O14983 1001 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 ZBTB5O15062 677 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 CA12O43570 354 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 GCLCP48506 637 aaPredicted RBP11.82□□□□□ -0.52
SYNE2-215ENST00000554997 OAZ1P54368 228 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 SSRP1Q08945 709 aaKnown RBP11.82□□□□□ -0.52
SYNE2-215ENST00000554997 ST3GAL1Q11201 340 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 BECN1Q14457 450 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 POTEEQ6S8J3 1075 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 CCDC83Q8IWF9 413 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 ATG4CQ96DT6 458 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 RRP36Q96EU6 259 aaKnown RBP11.82□□□□□ -0.52
SYNE2-215ENST00000554997 INTS4Q96HW7 963 aaKnown RBP11.82□□□□□ -0.52
SYNE2-215ENST00000554997 PARK7Q99497 189 aaKnown RBP11.82□□□□□ -0.52
SYNE2-215ENST00000554997 RNF26Q9BY78 433 aaPredicted RBP11.82□□□□□ -0.52
SYNE2-215ENST00000554997 ZFYVE28Q9HCC9 887 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 RBM27Q9P2N5 1060 aaKnown RBP11.82□□□□□ -0.52
SYNE2-215ENST00000554997 PNMA2Q9UL42 364 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 RABGAP1Q9Y3P9 1069 aa11.82□□□□□ -0.52
SYNE2-215ENST00000554997 TLR2O60603 784 aa11.81□□□□□ -0.52
SYNE2-215ENST00000554997 FMNL1O95466 1100 aaPredicted RBP11.81□□□□□ -0.52
SYNE2-215ENST00000554997 AKAP17AQ02040 695 aaKnown RBP11.81□□□□□ -0.52
SYNE2-215ENST00000554997 MAP2K1Q02750 393 aaPredicted RBP11.81□□□□□ -0.52
SYNE2-215ENST00000554997 TRAF1Q13077 416 aa11.81□□□□□ -0.52
SYNE2-215ENST00000554997 TAF1CQ15572 869 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms