RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 COL5A3P25940 1745 aaPredicted RBP8.03□□□□□ -1.12
SCFD1-212ENST00000554486 H3BRJ5 948 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 FBXO24O75426 580 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 B3GALT4O96024 378 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 CYP19A1P11511 503 aaPredicted RBP8.02□□□□□ -1.13
SCFD1-212ENST00000554486 PCDH1Q08174 1060 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 ALDH1L2Q3SY69 923 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 RPS26P11Q5JNZ5 115 aaPredicted RBP8.02□□□□□ -1.13
SCFD1-212ENST00000554486 CCDC30Q5VVM6 783 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 WFDC12Q8WWY7 111 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 IGSF5Q9NSI5 407 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 PPP4R2Q9NY27 417 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 RGPD3A6NKT7 1758 aaPredicted RBP8.02□□□□□ -1.13
SCFD1-212ENST00000554486 RGPD4Q7Z3J3 1758 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 RREB1Q92766 1687 aa8.02□□□□□ -1.13
SCFD1-212ENST00000554486 PLSCR1O15162 318 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 ANXA1P04083 346 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 A1BGP04217 495 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 PROSER3Q2NL68 480 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 LRP10Q7Z4F1 713 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 TMEM130Q8N3G9 435 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 LINC00116Q8NCU8 138 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 TEX13AQ9BXU3 409 aaPredicted RBP8.01□□□□□ -1.13
SCFD1-212ENST00000554486 SMC4Q9NTJ3 1288 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 CHPF2Q9P2E5 772 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 CCNL1Q9UK58 526 aaPredicted RBP8.01□□□□□ -1.13
SCFD1-212ENST00000554486 RNF123Q5XPI4 1314 aa8.01□□□□□ -1.13
SCFD1-212ENST00000554486 ENC1O14682 589 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 FSCN2O14926 492 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 STARD3NLO95772 234 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 CRKLP46109 303 aaKnown RBP8□□□□□ -1.13
SCFD1-212ENST00000554486 IREB2P48200 963 aaKnown RBP8□□□□□ -1.13
SCFD1-212ENST00000554486 PIP4K2AP48426 406 aaPredicted RBP8□□□□□ -1.13
SCFD1-212ENST00000554486 ZNF157P51786 506 aaPredicted RBP8□□□□□ -1.13
SCFD1-212ENST00000554486 IKBKEQ14164 716 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 RSPO4Q2I0M5 234 aaPredicted RBP8□□□□□ -1.13
SCFD1-212ENST00000554486 TSNAXIP1Q2TAA8 658 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 NKAPLQ5M9Q1 402 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 INTS5Q6P9B9 1019 aaKnown RBP8□□□□□ -1.13
SCFD1-212ENST00000554486 G2E3Q7L622 706 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 KLHL23Q8NBE8 558 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 NECAB3Q96P71 396 aaPredicted RBP8□□□□□ -1.13
SCFD1-212ENST00000554486 NRSN2Q9GZP1 204 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 AKTIPQ9H8T0 292 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 DDX21Q9NR30 783 aaKnown RBP eCLIP8□□□□□ -1.13
SCFD1-212ENST00000554486 KCNK4Q9NYG8 393 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 PPM1HQ9ULR3 514 aa8□□□□□ -1.13
SCFD1-212ENST00000554486 SUPT16HQ9Y5B9 1047 aaKnown RBP8□□□□□ -1.13
SCFD1-212ENST00000554486 PAGE1O75459 146 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 C4BP0C0L5 1744 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 ST13P50502 369 aaKnown RBP7.99□□□□□ -1.13
SCFD1-212ENST00000554486 TAF1CQ15572 869 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-212ENST00000554486 TXNRD1Q16881 649 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 TPTE2Q6XPS3 522 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 STK35Q8TDR2 534 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 TP53INP1Q96A56 240 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 KLHDC7BQ96G42 594 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 CAMKK2Q96RR4 588 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 TRIM56Q9BRZ2 755 aaKnown RBP7.99□□□□□ -1.13
SCFD1-212ENST00000554486 STK31Q9BXU1 1019 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 CHMP4AQ9BY43 222 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 DBF4Q9UBU7 674 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-212ENST00000554486 ZBTB1Q9Y2K1 713 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 CNTNAP4Q9C0A0 1308 aa7.99□□□□□ -1.13
SCFD1-212ENST00000554486 PLIN1O60240 522 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 ADAM11O75078 769 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 CELA3AP09093 270 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 H2AFB1P0C5Y9 115 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 H2AFB2P0C5Z0 115 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 MYL6BP14649 208 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 CD68P34810 354 aaPredicted RBP7.98□□□□□ -1.13
SCFD1-212ENST00000554486 RRP1P56182 461 aaKnown RBP7.98□□□□□ -1.13
SCFD1-212ENST00000554486 EZH2Q15910 746 aaKnown RBP7.98□□□□□ -1.13
SCFD1-212ENST00000554486 RASIP1Q5U651 963 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 DEFB132Q7Z7B7 95 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 WNT8BQ93098 351 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 SOX17Q9H6I2 414 aaPredicted RBP7.98□□□□□ -1.13
SCFD1-212ENST00000554486 PHAXQ9H814 394 aaKnown RBP7.98□□□□□ -1.13
SCFD1-212ENST00000554486 ZFYVE1Q9HBF4 777 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 HYPKQ9NX55 129 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 NOB1Q9ULX3 412 aaKnown RBP7.98□□□□□ -1.13
SCFD1-212ENST00000554486 TNNQ9UQP3 1299 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 KIF16BQ96L93 1317 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 UBR3Q6ZT12 1888 aa7.98□□□□□ -1.13
SCFD1-212ENST00000554486 TUBGCP6Q96RT7 1819 aa7.97□□□□□ -1.13
SCFD1-212ENST00000554486 DDX3YO15523 660 aaKnown RBP7.97□□□□□ -1.13
SCFD1-212ENST00000554486 CANXP27824 592 aaKnown RBP7.97□□□□□ -1.13
SCFD1-212ENST00000554486 NOS3P29474 1203 aa7.97□□□□□ -1.13
SCFD1-212ENST00000554486 ARL4DP49703 201 aa7.97□□□□□ -1.13
SCFD1-212ENST00000554486 EIF5P55010 431 aaKnown RBP7.97□□□□□ -1.13
SCFD1-212ENST00000554486 FANCCQ00597 558 aa7.97□□□□□ -1.13
SCFD1-212ENST00000554486 FOXD4L6Q3SYB3 417 aaPredicted RBP7.97□□□□□ -1.13
SCFD1-212ENST00000554486 FOXD4L3Q6VB84 417 aaPredicted RBP7.97□□□□□ -1.13
SCFD1-212ENST00000554486 NPM2Q86SE8 214 aaKnown RBP7.97□□□□□ -1.13
SCFD1-212ENST00000554486 AMIGO3Q86WK7 504 aa7.97□□□□□ -1.13
SCFD1-212ENST00000554486 TMEM87AQ8NBN3 555 aa7.97□□□□□ -1.13
SCFD1-212ENST00000554486 XAGE3Q8WTP9 111 aa7.97□□□□□ -1.13
SCFD1-212ENST00000554486 SLC7A3Q8WY07 619 aa7.97□□□□□ -1.13
SCFD1-212ENST00000554486 TTF2Q9UNY4 1162 aaKnown RBP7.97□□□□□ -1.13
SCFD1-212ENST00000554486 NUP188Q5SRE5 1749 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms