RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MCM6Q14566 821 aa13.83□□□□□ -0.2
SHMT2-207ENST00000553837 BEND6Q5SZJ8 279 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-207ENST00000553837 TMEM139Q8IV31 216 aa13.83□□□□□ -0.2
SHMT2-207ENST00000553837 FNBP4Q8N3X1 1017 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-207ENST00000553837 KIFC2Q96AC6 838 aa13.83□□□□□ -0.2
SHMT2-207ENST00000553837 ATP8A2Q9NTI2 1148 aa13.83□□□□□ -0.2
SHMT2-207ENST00000553837 RBM28Q9NW13 759 aaKnown RBP13.83□□□□□ -0.2
SHMT2-207ENST00000553837 NHSQ6T4R5 1651 aa13.83□□□□□ -0.2
SHMT2-207ENST00000553837 TAF1LQ8IZX4 1826 aa13.83□□□□□ -0.2
SHMT2-207ENST00000553837 MAST2Q6P0Q8 1798 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 TRIM75PA6NK02 468 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 PCP11498 1178 aaKnown RBP13.82□□□□□ -0.2
SHMT2-207ENST00000553837 CASP1P29466 404 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 CORO7P57737 925 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 CHMP4BP1P59074 171 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 MORC3Q14149 939 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 ZNF174Q15697 407 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 SBK1Q52WX2 424 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 OLFM4Q6UX06 510 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 SRGAP1Q7Z6B7 1085 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 DHX58Q96C10 678 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 DYNLL2Q96FJ2 89 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 IL17RBQ9NRM6 502 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 DIXDC1Q155Q3 683 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 TRMT44Q8IYL2 757 aaKnown RBP13.82□□□□□ -0.2
SHMT2-207ENST00000553837 CEP112Q8N8E3 955 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 MED4Q9NPJ6 270 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 MCM9Q9NXL9 1143 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 RAB21Q9UL25 225 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 CCDC88AQ3V6T2 1871 aa13.82□□□□□ -0.2
SHMT2-207ENST00000553837 THSD7AQ9UPZ6 1657 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 SPATA31A6Q5VVP1 1343 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 CALM1P0DP23 149 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 CALM2P0DP24 149 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 CALM3P0DP25 149 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 TUBB2AQ13885 445 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 HSP90B2PQ58FF3 399 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 SPATA20Q8TB22 786 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 SH3RF3Q8TEJ3 882 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-207ENST00000553837 TUBB2BQ9BVA1 445 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 ARPP21Q9UBL0 812 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-207ENST00000553837 CEP131Q9UPN4 1083 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 SLC35G1Q2M3R5 365 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 SWT1Q5T5J6 900 aaKnown RBP13.81□□□□□ -0.2
SHMT2-207ENST00000553837 DZIP1Q86YF9 867 aaKnown RBP13.81□□□□□ -0.2
SHMT2-207ENST00000553837 CCDC12Q8WUD4 166 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-207ENST00000553837 SYMPKQ92797 1274 aaKnown RBP13.81□□□□□ -0.2
SHMT2-207ENST00000553837 ACBD3Q9H3P7 528 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 USP21Q9UK80 565 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 L1RE1Q9UN81 338 aa13.81□□□□□ -0.2
SHMT2-207ENST00000553837 LY75O60449 1722 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 TSPY2A6NKD2 308 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 ZNF18P17022 549 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 XBP1P17861 261 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 TBX2Q13207 712 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-207ENST00000553837 IL17AQ16552 155 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 C12orf60Q5U649 245 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 FAM196AQ6ZSG2 479 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 SUGP1Q8IWZ8 645 aaKnown RBP13.8□□□□□ -0.2
SHMT2-207ENST00000553837 MSANTD4Q8NCY6 345 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 FAM71BQ8TC56 605 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 DRC1Q96MC2 740 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 GBP3Q9H0R5 595 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 LRRC4BQ9NT99 713 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 ANKIB1Q9P2G1 1089 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 FAN1Q9Y2M0 1017 aa13.8□□□□□ -0.2
SHMT2-207ENST00000553837 TUBBP07437 444 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 SCG2P13521 617 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 AFMP43652 599 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 GSCP56915 257 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-207ENST00000553837 GRAPQ13588 217 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 FOXR1Q6PIV2 292 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 SH3RF1Q7Z6J0 888 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 EFCAB13Q8IY85 973 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 STAG2Q8N3U4 1231 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 SLC44A5Q8NCS7 719 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 CTCFLQ8NI51 663 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-207ENST00000553837 GRAPLQ8TC17 118 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-207ENST00000553837 ANKZF1Q9H8Y5 726 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 NFE2L3Q9Y4A8 694 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 USP17L3A6NCW0 530 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 USP17L4A6NCW7 530 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 CPP00450 1065 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 CD44P16070 742 aaKnown RBP13.79□□□□□ -0.2
SHMT2-207ENST00000553837 RFC4P35249 363 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 TFAP4Q01664 338 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 PTGDRQ13258 359 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 PFKFB3Q16875 520 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-207ENST00000553837 TTC38Q5R3I4 469 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 LRRC31Q6UY01 552 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 TOGARAM2Q6ZUX3 1019 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 USP17L1Q7RTZ2 530 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 RPAINQ86UA6 219 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 PAGE5Q96GU1 130 aa13.79□□□□□ -0.2
SHMT2-207ENST00000553837 SAMSN1Q9NSI8 373 aaKnown RBP13.79□□□□□ -0.2
SHMT2-207ENST00000553837 LDHBP07195 334 aaKnown RBP13.78□□□□□ -0.2
SHMT2-207ENST00000553837 TRAPPC3LQ5T215 181 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 TYW1BQ6NUM6 668 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 PIK3AP1Q6ZUJ8 805 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 GPATCH11Q8N954 259 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms