RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ESYT2A0FGR8 921 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 GRIN3BO60391 1043 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 NAPAP54920 295 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 PTGDRQ13258 359 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 MKL1Q969V6 931 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 PIGSQ96S52 555 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 C6orf50Q9HD87 102 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 TMOD2Q9NZR1 351 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 NYAP2Q9P242 653 aa30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 FRMPD2Q68DX3 1309 aaPredicted RBP30.05■■■□□ 2.4
CCDC88C-205ENST00000553403 GNA11P29992 359 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 GPATCH4Q5T3I0 446 aaKnown RBP30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 KANK3Q6NY19 840 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 CLEC10AQ8IUN9 316 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 UBA5Q9GZZ9 404 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 KANSL2Q9H9L4 492 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 COL4A5P29400 1685 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 SPDYE2BA6NHP3 402 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 RAD17O75943 681 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 SPDYE6P0CI01 402 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 HOMER1Q86YM7 354 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 NIM1KQ8IY84 436 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 ZNRF3Q9ULT6 936 aa30.04■■■□□ 2.4
CCDC88C-205ENST00000553403 POLR2DO15514 142 aaKnown RBP30.03■■■□□ 2.4
CCDC88C-205ENST00000553403 MDM2Q00987 491 aaPredicted RBP30.03■■■□□ 2.4
CCDC88C-205ENST00000553403 ARL6IP4Q66PJ3 421 aaKnown RBP30.03■■■□□ 2.4
CCDC88C-205ENST00000553403 DHX40Q8IX18 779 aaKnown RBP30.03■■■□□ 2.4
CCDC88C-205ENST00000553403 VAT1LQ9HCJ6 419 aa30.03■■■□□ 2.4
CCDC88C-205ENST00000553403 BECN2A8MW95 431 aa30.02■■■□□ 2.4
CCDC88C-205ENST00000553403 TMEM179Q6ZVK1 233 aa30.02■■■□□ 2.4
CCDC88C-205ENST00000553403 KRT25Q7Z3Z0 450 aa30.02■■■□□ 2.4
CCDC88C-205ENST00000553403 SMCO2A6NFE2 343 aa30.01■■■□□ 2.4
CCDC88C-205ENST00000553403 SARM1Q6SZW1 724 aa30.01■■■□□ 2.4
CCDC88C-205ENST00000553403 AGBL3Q8NEM8 1001 aa30.01■■■□□ 2.4
CCDC88C-205ENST00000553403 RASGRP4Q8TDF6 673 aa30.01■■■□□ 2.4
CCDC88C-205ENST00000553403 GPCPD1Q9NPB8 672 aa30.01■■■□□ 2.4
CCDC88C-205ENST00000553403 RTN4Q9NQC3 1192 aaKnown RBP30.01■■■□□ 2.4
CCDC88C-205ENST00000553403 SERTAD1Q9UHV2 236 aa30.01■■■□□ 2.4
CCDC88C-205ENST00000553403 MYH4Q9Y623 1939 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 A0A087WWV3 80 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 MCM7P33993 719 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 PNOCQ13519 176 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 DLGAP5Q15398 846 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 DPCR1Q3MIW9 517 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 OGFOD1Q8N543 542 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 C4orf32Q8N8J7 132 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 CCDC34Q96HJ3 373 aa30.01■■■□□ 2.39
CCDC88C-205ENST00000553403 ACTN4O43707 911 aaKnown RBP30■■■□□ 2.39
CCDC88C-205ENST00000553403 SLURP2P0DP57 97 aa30■■■□□ 2.39
CCDC88C-205ENST00000553403 CLCN1P35523 988 aa30■■■□□ 2.39
CCDC88C-205ENST00000553403 DALRD3Q5D0E6 543 aaKnown RBP30■■■□□ 2.39
CCDC88C-205ENST00000553403 FAM196BA6NMK8 535 aa29.99■■■□□ 2.39
CCDC88C-205ENST00000553403 ATP2B2Q01814 1243 aa29.99■■■□□ 2.39
CCDC88C-205ENST00000553403 PPP1R18Q6NYC8 613 aa29.99■■■□□ 2.39
CCDC88C-205ENST00000553403 USP49Q70CQ1 688 aa29.99■■■□□ 2.39
CCDC88C-205ENST00000553403 PLA2G4DQ86XP0 818 aa29.99■■■□□ 2.39
CCDC88C-205ENST00000553403 MTMR14Q8NCE2 650 aa29.99■■■□□ 2.39
CCDC88C-205ENST00000553403 DCAF4Q8WV16 495 aa29.99■■■□□ 2.39
CCDC88C-205ENST00000553403 ZKSCAN5Q9Y2L8 839 aa29.99■■■□□ 2.39
CCDC88C-205ENST00000553403 PNMA6FA0A0J9YX94 578 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 BIN1O00499 593 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 EEF2P13639 858 aaKnown RBP29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 YBX3P16989 372 aaKnown RBP eCLIP29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 MSNP26038 577 aaKnown RBP29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 ZNF75DP51815 510 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 POSTNQ15063 836 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 ARHGAP30Q7Z6I6 1101 aaPredicted RBP29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 SYMPKQ92797 1274 aaKnown RBP29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 PYM1Q9BRP8 204 aaKnown RBP29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 ZNF70Q9UC06 446 aaPredicted RBP29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 CCDC96Q2M329 555 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 ABCB5Q2M3G0 1257 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 AOPEPQ8N6M6 819 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 EPSTI1Q96J88 318 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 JMJD4Q9H9V9 463 aa29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 HERC5Q9UII4 1024 aaKnown RBP29.98■■■□□ 2.39
CCDC88C-205ENST00000553403 VWA3AA6NCI4 1184 aa29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 LAD1O00515 517 aa29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 NONOQ15233 471 aaKnown RBP eCLIP29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 FKBP1CQ5VVH2 108 aa29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 ADGRF4Q8IZF3 695 aa29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 FAM151AQ8WW52 585 aa29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 MTMR8Q96EF0 704 aa29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 TRIM5Q9C035 493 aa29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 PCDHA5Q9Y5H7 936 aa29.97■■■□□ 2.39
CCDC88C-205ENST00000553403 UTRNP46939 3433 aa29.96■■■□□ 2.39
CCDC88C-205ENST00000553403 GOLGA6L6A8MZA4 724 aa29.96■■■□□ 2.39
CCDC88C-205ENST00000553403 TPM3P06753 285 aa29.96■■■□□ 2.39
CCDC88C-205ENST00000553403 LONP1P36776 959 aaKnown RBP29.96■■■□□ 2.39
CCDC88C-205ENST00000553403 INF2Q27J81 1249 aa29.96■■■□□ 2.39
CCDC88C-205ENST00000553403 SPDYE2Q495Y8 402 aa29.96■■■□□ 2.39
CCDC88C-205ENST00000553403 NT5DC1Q5TFE4 455 aa29.96■■■□□ 2.39
CCDC88C-205ENST00000553403 EIF2AK3Q9NZJ5 1116 aaKnown RBP29.96■■■□□ 2.39
CCDC88C-205ENST00000553403 SMTNL1A8MU46 457 aa29.95■■■□□ 2.39
CCDC88C-205ENST00000553403 SLFN14P0C7P3 912 aa29.95■■■□□ 2.39
CCDC88C-205ENST00000553403 ICA1Q05084 483 aa29.95■■■□□ 2.39
CCDC88C-205ENST00000553403 SEPT2Q15019 361 aa29.95■■■□□ 2.39
CCDC88C-205ENST00000553403 CSRNP1Q96S65 589 aa29.95■■■□□ 2.39
CCDC88C-205ENST00000553403 CDC25BP30305 580 aa29.95■■■□□ 2.38
CCDC88C-205ENST00000553403 SARSP49591 514 aaKnown RBP29.95■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms