RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 F5H6K3 240 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 PGK1P00558 417 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 CLTBP09497 229 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 KLRC3Q07444 240 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 ANKRD33Q7Z3H0 272 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.17□□□□□ -0.14
CKAP4-202ENST00000552828 KBTBD3Q8NAB2 608 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 PRPF38AQ8NAV1 312 aaKnown RBP14.17□□□□□ -0.14
CKAP4-202ENST00000552828 MKL1Q969V6 931 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 FAM161BQ96MY7 647 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 TOX2Q96NM4 488 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 CDX2Q99626 313 aaPredicted RBP14.17□□□□□ -0.14
CKAP4-202ENST00000552828 CNPY2Q9Y2B0 182 aa14.17□□□□□ -0.14
CKAP4-202ENST00000552828 BAZ2AQ9UIF9 1905 aaKnown RBP14.16□□□□□ -0.14
CKAP4-202ENST00000552828 SMARCA5O60264 1052 aaPredicted RBP14.16□□□□□ -0.14
CKAP4-202ENST00000552828 SNAI1O95863 264 aaPredicted RBP14.16□□□□□ -0.14
CKAP4-202ENST00000552828 NDUFB10O96000 172 aa14.16□□□□□ -0.14
CKAP4-202ENST00000552828 CCSAPQ6IQ19 270 aaPredicted RBP14.16□□□□□ -0.14
CKAP4-202ENST00000552828 ZNF467Q7Z7K2 595 aaPredicted RBP14.16□□□□□ -0.14
CKAP4-202ENST00000552828 KLHDC9Q8NEP7 349 aa14.16□□□□□ -0.14
CKAP4-202ENST00000552828 OSBP2Q969R2 916 aa14.16□□□□□ -0.14
CKAP4-202ENST00000552828 NUP88Q99567 741 aaPredicted RBP14.16□□□□□ -0.14
CKAP4-202ENST00000552828 COL25A1Q9BXS0 654 aaPredicted RBP14.16□□□□□ -0.14
CKAP4-202ENST00000552828 MKNK2Q9HBH9 465 aa14.16□□□□□ -0.14
CKAP4-202ENST00000552828 SYNPO2Q9UMS6 1093 aa14.16□□□□□ -0.14
CKAP4-202ENST00000552828 RIPK3Q9Y572 518 aa14.16□□□□□ -0.14
CKAP4-202ENST00000552828 PCDHB15Q9Y5E8 787 aa14.16□□□□□ -0.14
CKAP4-202ENST00000552828 RNF113AO15541 343 aaKnown RBP14.15□□□□□ -0.14
CKAP4-202ENST00000552828 RAD21O60216 631 aa14.15□□□□□ -0.14
CKAP4-202ENST00000552828 ACLYP53396 1101 aa14.15□□□□□ -0.14
CKAP4-202ENST00000552828 EPHB4P54760 987 aa14.15□□□□□ -0.14
CKAP4-202ENST00000552828 SNRNP48Q6IEG0 339 aaKnown RBP14.15□□□□□ -0.14
CKAP4-202ENST00000552828 APPBP2Q92624 585 aa14.15□□□□□ -0.14
CKAP4-202ENST00000552828 TTYH1Q9H313 450 aaPredicted RBP14.15□□□□□ -0.14
CKAP4-202ENST00000552828 SLC38A10Q9HBR0 1119 aa14.15□□□□□ -0.14
CKAP4-202ENST00000552828 FAM184BQ9ULE4 1060 aa14.15□□□□□ -0.14
CKAP4-202ENST00000552828 GREB1LQ9C091 1923 aaPredicted RBP14.15□□□□□ -0.14
CKAP4-202ENST00000552828 SYNRGQ9UMZ2 1314 aa14.15□□□□□ -0.15
CKAP4-202ENST00000552828 MYH8P13535 1937 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 TMEM265A0A087WTH1 108 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 MOXD2PA6NHM9 499 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 DUSP11O75319 330 aaKnown RBP14.14□□□□□ -0.15
CKAP4-202ENST00000552828 ZFYP08048 801 aaPredicted RBP14.14□□□□□ -0.15
CKAP4-202ENST00000552828 GNAT2P19087 354 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 CST5P28325 142 aaPredicted RBP14.14□□□□□ -0.15
CKAP4-202ENST00000552828 OAZ1P54368 228 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 FAAP100Q0VG06 881 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 EXOC6Q8TAG9 804 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 NUP133Q8WUM0 1156 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 LENG1Q96BZ8 264 aaPredicted RBP14.14□□□□□ -0.15
CKAP4-202ENST00000552828 DDX11Q96FC9 970 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 DCTPP1Q9H773 170 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 ZNF287Q9HBT7 754 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 EPB41L4AQ9HCS5 686 aaPredicted RBP14.14□□□□□ -0.15
CKAP4-202ENST00000552828 MTMR4Q9NYA4 1195 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 CLIP2Q9UDT6 1046 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 PRUNE2Q8WUY3 3088 aa14.14□□□□□ -0.15
CKAP4-202ENST00000552828 MINDY4BA8MYZ0 360 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 GPAA1O43292 621 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 PQBP1O60828 265 aaKnown RBP14.13□□□□□ -0.15
CKAP4-202ENST00000552828 ZBED4O75132 1171 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 RAG1P15918 1043 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 KCNA10Q16322 511 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 GMCL1P1Q8NEA9 526 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 TMEM39AQ9NV64 488 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 FBXO40Q9UH90 709 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 FEM1BQ9UK73 627 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 ZNFX1Q9P2E3 1918 aaKnown RBP14.13□□□□□ -0.15
CKAP4-202ENST00000552828 COL11A1P12107 1806 aaPredicted RBP14.13□□□□□ -0.15
CKAP4-202ENST00000552828 ELP1O95163 1332 aa14.13□□□□□ -0.15
CKAP4-202ENST00000552828 SMCHD1A6NHR9 2005 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 DCDC2CA8MYV0 355 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 PATL2C9JE40 543 aaKnown RBP14.12□□□□□ -0.15
CKAP4-202ENST00000552828 TTLL1O95922 423 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 CDK7P50613 346 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 FPGSQ05932 587 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 ACVR2BQ13705 512 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 ZNF444Q8N0Y2 327 aaPredicted RBP14.12□□□□□ -0.15
CKAP4-202ENST00000552828 CHST13Q8NET6 341 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 CEP95Q96GE4 821 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 GPATCH3Q96I76 525 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 RNPC3Q96LT9 517 aaKnown RBP14.12□□□□□ -0.15
CKAP4-202ENST00000552828 FGD4Q96M96 766 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 UPF3AQ9H1J1 476 aaKnown RBP14.12□□□□□ -0.15
CKAP4-202ENST00000552828 ABHD16BQ9H3Z7 469 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 STARD7Q9NQZ5 370 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 TBX21Q9UL17 535 aa14.12□□□□□ -0.15
CKAP4-202ENST00000552828 PLIN4Q96Q06 1357 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 M0R2C6 588 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 PRDM1O75626 825 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 TIMP1P01033 207 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 FDX1P10109 184 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 GJA9P57773 515 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 NKX3-2P78367 333 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 IFNL3Q8IZI9 196 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 CPXCR1Q8N123 301 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 STK11IPQ8N1F8 1099 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 NEDD1Q8NHV4 660 aa14.11□□□□□ -0.15
CKAP4-202ENST00000552828 MAFAQ8NHW3 353 aaPredicted RBP14.11□□□□□ -0.15
CKAP4-202ENST00000552828 KIFC2Q96AC6 838 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms