RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 C2CD5Q86YS7 1000 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 NELFBQ8WX92 580 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 RRP36Q96EU6 259 aaKnown RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 PPP1R13BQ96KQ4 1090 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 TRIM47Q96LD4 638 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 RTFDC1Q9BY42 306 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 HSD3B7Q9H2F3 369 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 SPTLC3Q9NUV7 552 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 INTS13Q9NVM9 706 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 MAD2L2Q9UI95 211 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 TUBE1Q9UJT0 475 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 ZBTB12Q9Y330 459 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 MYH13Q9UKX3 1938 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 DOT1LQ8TEK3 1739 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 NWD2Q9ULI1 1742 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L10C9JJH3 530 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 CBFA2T2O43439 604 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 RRP9O43818 475 aaKnown RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 C21orf2O43822 256 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 DDAH1O94760 285 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 CASP14P31944 242 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 EN1Q05925 392 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 RBL2Q08999 1139 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 NPY5RQ15761 445 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 MNS1Q8NEH6 495 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 BAG1Q99933 345 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 CARD6Q9BX69 1037 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 SRRTQ9BXP5 876 aaKnown RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 PUF60Q9UHX1 559 aaKnown RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 PCDHA6Q9UN73 950 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 PCDHA8Q9Y5H6 950 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 STK36Q9NRP7 1315 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 SYNRGQ9UMZ2 1314 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 SLFN14P0C7P3 912 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 FCER1AP12319 257 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 GSDMDP57764 484 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 UBXN1Q04323 297 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PDE4DQ08499 809 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 AOC3Q16853 763 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 TBC1D10BQ4KMP7 808 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 FILIP1LQ4L180 1135 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 FKBP15Q5T1M5 1219 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 SARM1Q6SZW1 724 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 ACRBPQ8NEB7 543 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PRIMPOLQ96LW4 560 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 DRC1Q96MC2 740 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 SLF1Q9BQI6 1058 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 TANGO6Q9C0B7 1094 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 BMP2KQ9NSY1 1161 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 ANAPC4Q9UJX5 808 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PCDHA4Q9UN74 947 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 N4BP2Q86UW6 1770 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 LRP6O75581 1613 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 CRYBG1Q9Y4K1 1723 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 ORC4O43929 436 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 CABP7Q86V35 215 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 NELFCDQ8IXH7 590 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 MTRQ99707 1265 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PLEKHA4Q9H4M7 779 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 TCP11L1Q9NUJ3 509 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 NUP188Q5SRE5 1749 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 POLRMTO00411 1230 aaKnown RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 MEIS1O00470 390 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 SEMA3EO15041 775 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 NKRFO15226 690 aaKnown RBP eCLIP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 BBOX1O75936 387 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 ABL1P00519 1130 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 RPN1P04843 607 aaKnown RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PLCG1P19174 1290 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 HOXA13P31271 388 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PRCPP42785 496 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 KLK7P49862 253 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PMS1P54277 932 aaKnown RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 MRPS25P82663 173 aaKnown RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 MDM2Q00987 491 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PPARDQ03181 441 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 ARID5AQ03989 594 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 MCM6Q14566 821 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 SEPT2Q15019 361 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PTPROQ16827 1216 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 VSTM4Q8IW00 320 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 CCDC12Q8WUD4 166 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-215ENST00000552823 TIGD1Q96MW7 591 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 NUDT12Q9BQG2 462 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 PDCL3Q9H2J4 239 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 C6orf50Q9HD87 102 aa6.31□□□□□ -1.4
LIMA1-215ENST00000552823 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.31□□□□□ -1.41e-7■■■■■ 115.4
LIMA1-215ENST00000552823 SPEF2Q9C093 1822 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 LAMB4A4D0S4 1761 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 RNF225M0QZC1 329 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CHMP2AO43633 222 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 KRT18P05783 430 aaKnown RBP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CALML3P27482 149 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 STAT3P40763 770 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 MTIF2P46199 727 aaKnown RBP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 RHBDL3P58872 404 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 MORC3Q14149 939 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 NONOQ15233 471 aaKnown RBP eCLIP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CDC42EP5Q6NZY7 148 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms