RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ABCB5Q2M3G0 1257 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 CERKLQ49MI3 558 aaPredicted RBP12.81□□□□□ -0.36
VPS29-208ENST00000550267 CCDC158Q5M9N0 1113 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 PRAMEF19Q5SWL8 479 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 OLFML2BQ68BL8 750 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 BLOC1S3Q6QNY0 202 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 TRMT2AQ8IZ69 625 aaKnown RBP12.81□□□□□ -0.36
VPS29-208ENST00000550267 MIGA1Q8NAN2 632 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 MOV10L1Q9BXT6 1211 aaKnown RBP12.81□□□□□ -0.36
VPS29-208ENST00000550267 SERPINB13Q9UIV8 391 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 COBLO75128 1261 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 GNAI2P04899 355 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 ITGB8P26012 769 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 GUCY1A2P33402 732 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 EPHB4P54760 987 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 TLE2Q04725 743 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 TNNI3KQ59H18 835 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 FAM47AQ5JRC9 791 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 USP38Q8NB14 1042 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 RNPC3Q96LT9 517 aaKnown RBP12.8□□□□□ -0.36
VPS29-208ENST00000550267 EHD4Q9H223 541 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 CABP5Q9NP86 173 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 ADGRG1Q9Y653 693 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 FPGT-TNNI3KV9GXZ4 949 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 ZNF236Q9UL36 1845 aa12.8□□□□□ -0.36
VPS29-208ENST00000550267 LAMA2P24043 3122 aaKnown RBP12.79□□□□□ -0.36
VPS29-208ENST00000550267 DNAH12Q6ZR08 3092 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 RNF223E7ERA6 249 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 STRNO43815 780 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 CT47B1P0C2W7 299 aaPredicted RBP12.79□□□□□ -0.36
VPS29-208ENST00000550267 ERCC3P19447 782 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 SHMT1P34896 483 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 GRIN2CQ14957 1233 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 KCNV2Q8TDN2 545 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 GPR108Q9NPR9 543 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 TNNQ9UQP3 1299 aa12.79□□□□□ -0.36
VPS29-208ENST00000550267 CDH23Q9H251 3354 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 TMEM265A0A087WTH1 108 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 A0A1W2PRG0 241 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 ACTN4O43707 911 aaKnown RBP12.78□□□□□ -0.36
VPS29-208ENST00000550267 IDH1O75874 414 aaKnown RBP12.78□□□□□ -0.36
VPS29-208ENST00000550267 PLCD1P51178 756 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 RARSP54136 660 aaKnown RBP12.78□□□□□ -0.36
VPS29-208ENST00000550267 COG2Q14746 738 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 SEPT2Q15019 361 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 C1orf53Q5VUE5 145 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 TTC6Q86TZ1 520 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 SHCBP1Q8NEM2 672 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 ARHGAP45Q92619 1136 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 ZNF512BQ96KM6 892 aaPredicted RBP12.78□□□□□ -0.36
VPS29-208ENST00000550267 SPATC1LQ9H0A9 340 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 TACC3Q9Y6A5 838 aa12.78□□□□□ -0.36
VPS29-208ENST00000550267 MYO5AQ9Y4I1 1855 aaKnown RBP12.77□□□□□ -0.37
VPS29-208ENST00000550267 TNFRSF10AO00220 468 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 IGSF3O75054 1194 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 CLTBP09497 229 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 SLC19A1P41440 591 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 OS9Q13438 667 aaPredicted RBP12.77□□□□□ -0.37
VPS29-208ENST00000550267 KMT5BQ4FZB7 885 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 NCAPG2Q86XI2 1143 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 MAGEB6Q8N7X4 407 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 MAML3Q96JK9 1138 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 TANGO6Q9C0B7 1094 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 XPNPEP3Q9NQH7 507 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 HOXC10Q9NYD6 342 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 TLR7Q9NYK1 1049 aaKnown RBP12.77□□□□□ -0.37
VPS29-208ENST00000550267 PHF24Q9UPV7 400 aa12.77□□□□□ -0.37
VPS29-208ENST00000550267 A0A0G2JMZ2 1700 aa12.76□□□□□ -0.37
VPS29-208ENST00000550267 MYH1P12882 1939 aa12.76□□□□□ -0.37
VPS29-208ENST00000550267 RAG1P15918 1043 aa12.76□□□□□ -0.37
VPS29-208ENST00000550267 PLS1Q14651 629 aa12.76□□□□□ -0.37
VPS29-208ENST00000550267 KIAA1755Q5JYT7 1200 aa12.76□□□□□ -0.37
VPS29-208ENST00000550267 TSHZ2Q9NRE2 1034 aa12.76□□□□□ -0.37
VPS29-208ENST00000550267 SLC5A4Q9NY91 659 aa12.76□□□□□ -0.37
VPS29-208ENST00000550267 RAPGEFL1Q9UHV5 662 aa12.76□□□□□ -0.37
VPS29-208ENST00000550267 DBNLQ9UJU6 430 aaKnown RBP12.76□□□□□ -0.37
VPS29-208ENST00000550267 RCCD1A6NED2 376 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 MPHOSPH10O00566 681 aaKnown RBP12.75□□□□□ -0.37
VPS29-208ENST00000550267 KIAA0355O15063 1070 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 PQBP1O60828 265 aaKnown RBP12.75□□□□□ -0.37
VPS29-208ENST00000550267 PGK1P00558 417 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 RARBP10826 455 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 FPGSQ05932 587 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 ZNF787Q6DD87 383 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 CERS3Q8IU89 383 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 ATG4CQ96DT6 458 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 CCDC8Q9H0W5 538 aaPredicted RBP12.75□□□□□ -0.37
VPS29-208ENST00000550267 MROH8Q9H579 483 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 ANTXR1Q9H6X2 564 aa12.75□□□□□ -0.37
VPS29-208ENST00000550267 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.74□□□□□ -0.37
VPS29-208ENST00000550267 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.74□□□□□ -0.37
VPS29-208ENST00000550267 A0A1W2PQ45 241 aaPredicted RBP12.74□□□□□ -0.37
VPS29-208ENST00000550267 A0A1W2PQY0 241 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 SURF6O75683 361 aaKnown RBP12.74□□□□□ -0.37
VPS29-208ENST00000550267 POLR3DP05423 398 aaPredicted RBP12.74□□□□□ -0.37
VPS29-208ENST00000550267 FCER1AP12319 257 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 TRIM27P14373 513 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 GABPAQ06546 454 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 TRIM67Q6ZTA4 783 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 RNF180Q86T96 592 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms