RNA–Protein interactions for RNA: ENST00000550051.5

TRAFD1-207, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene TRAFD1, Length 1,003 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-207ENST00000550051 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.85□□□□□ -0.51
TRAFD1-207ENST00000550051 BOLA2Q9H3K6 86 aa11.85□□□□□ -0.51
TRAFD1-207ENST00000550051 GOPCQ9HD26 462 aa11.85□□□□□ -0.51
TRAFD1-207ENST00000550051 ZBED9Q6R2W3 1325 aa11.85□□□□□ -0.51
TRAFD1-207ENST00000550051 DNAJC25-GNG10A0A024R161 153 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 ACLYP53396 1101 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 CCSAPQ6IQ19 270 aaPredicted RBP11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 CTR9Q6PD62 1173 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 ZNF467Q7Z7K2 595 aaPredicted RBP11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 NUP133Q8WUM0 1156 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 MYLIPQ8WY64 445 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 ZBTB40Q9NUA8 1239 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 TMEM39AQ9NV64 488 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 FAM184BQ9ULE4 1060 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 CNPY2Q9Y2B0 182 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 MYH7P12883 1935 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 SYNGAP1Q96PV0 1343 aa11.84□□□□□ -0.51
TRAFD1-207ENST00000550051 EYSQ5T1H1 3165 aa11.83□□□□□ -0.51
TRAFD1-207ENST00000550051 MOXD2PA6NHM9 499 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 DCDC2CA8MYV0 355 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 APBB1O00213 710 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 ATP2A1O14983 1001 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 DUSP11O75319 330 aaKnown RBP11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 SNAI1O95863 264 aaPredicted RBP11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 CDK7P50613 346 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 HNRNPUQ00839 825 aaKnown RBP eCLIP11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 FPGSQ05932 587 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 SBK1Q52WX2 424 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 FAM83BQ5T0W9 1011 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 ZSCAN25Q6NSZ9 544 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 PRPF38AQ8NAV1 312 aaKnown RBP11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 SYMPKQ92797 1274 aaKnown RBP11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 RNPC3Q96LT9 517 aaKnown RBP11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 TEX13BQ9BXU2 312 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 NYAP2Q9P242 653 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 SLC4A4Q9Y6R1 1079 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 ELP1O95163 1332 aa11.83□□□□□ -0.52
TRAFD1-207ENST00000550051 F5H6K3 240 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 PQBP1O60828 265 aaKnown RBP11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 TIMP1P01033 207 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 FOSL2P15408 326 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 CST5P28325 142 aaPredicted RBP11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 KLRC3Q07444 240 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 KCNA10Q16322 511 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 GIMAP6Q6P9H5 292 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 MKL1Q969V6 931 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 DDX11Q96FC9 970 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 STRBPQ96SI9 672 aaKnown RBP11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 PUS7LQ9H0K6 701 aaKnown RBP11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 STARD7Q9NQZ5 370 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 ZBTB47Q9UFB7 747 aaPredicted RBP11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 DDX19BQ9UMR2 479 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 VCANP13611 3396 aa11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 GREB1LQ9C091 1923 aaPredicted RBP11.82□□□□□ -0.52
TRAFD1-207ENST00000550051 CHGBP05060 677 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 NKX3-2P78367 333 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 MFSD5Q6N075 450 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 SLF1Q9BQI6 1058 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 CHMP4BQ9H444 224 aaKnown RBP11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 PRDM6Q9NQX0 595 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 ARPP21Q9UBL0 812 aaPredicted RBP11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 TBX21Q9UL17 535 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 SYNPO2Q9UMS6 1093 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 RIPK3Q9Y572 518 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 CDH23Q9H251 3354 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 PRUNE2Q8WUY3 3088 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 MROH7Q68CQ1 1323 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 SYNRGQ9UMZ2 1314 aa11.81□□□□□ -0.52
TRAFD1-207ENST00000550051 GSG1L2A8MUP6 293 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 RASA1P20936 1047 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 DNAJB2P25686 324 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 ACVR2BQ13705 512 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 GRIN2CQ14957 1233 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 RASIP1Q5U651 963 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 SNRNP48Q6IEG0 339 aaKnown RBP11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 C16orf59Q7L2K0 433 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 PCSK9Q8NBP7 692 aaKnown RBP11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 GLT1D1Q96MS3 346 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 UPF3AQ9H1J1 476 aaKnown RBP11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 ABHD16BQ9H3Z7 469 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 MKNK2Q9HBH9 465 aa11.8□□□□□ -0.52
TRAFD1-207ENST00000550051 IGKV6D-41A0A0C4DH26 115 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 ZBED4O75132 1171 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 NDUFB10O96000 172 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 ASGR1P07306 291 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 OAZ1P54368 228 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 GJA9P57773 515 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 CCDC174Q6PII3 467 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 LENG1Q96BZ8 264 aaPredicted RBP11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 NUP88Q99567 741 aaPredicted RBP11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 ZNF576Q9H609 170 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 SPC25Q9HBM1 224 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 SLC38A10Q9HBR0 1119 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 CLIP2Q9UDT6 1046 aa11.79□□□□□ -0.52
TRAFD1-207ENST00000550051 FBXO40Q9UH90 709 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms