RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 KIF20BQ96Q89 1820 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 RICTORQ6R327 1708 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 TMEM232C9JQI7 657 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 NEFHP12036 1026 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 CDK8P49336 464 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 COL9A3Q14050 684 aaPredicted RBP16.75■□□□□ 0.27
CUX1-214ENST00000550008 TPH2Q8IWU9 490 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 GDAP1L1Q96MZ0 367 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 FAM107BQ9H098 131 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 BBOX1O75936 387 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 TRAF1Q13077 416 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 SPATA1Q5VX52 437 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 CYP26C1Q6V0L0 522 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 CERS3Q8IU89 383 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 EPB41L4AQ9HCS5 686 aaPredicted RBP16.75■□□□□ 0.27
CUX1-214ENST00000550008 FDPSP14324 419 aaKnown RBP16.75■□□□□ 0.27
CUX1-214ENST00000550008 LRRC41Q15345 812 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 TYW1BQ6NUM6 668 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 CEP112Q8N8E3 955 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 CCDC94Q9BW85 323 aaPredicted RBP16.75■□□□□ 0.27
CUX1-214ENST00000550008 DNAJC5Q9H3Z4 198 aa16.75■□□□□ 0.27
CUX1-214ENST00000550008 PRPF3O43395 683 aaKnown RBP16.74■□□□□ 0.27
CUX1-214ENST00000550008 GTPBP6O43824 516 aaPredicted RBP16.74■□□□□ 0.27
CUX1-214ENST00000550008 RAD17O75943 681 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 HARSP12081 509 aaKnown RBP16.74■□□□□ 0.27
CUX1-214ENST00000550008 TERF1P54274 439 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 UBE2SQ16763 222 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 CCDC144BQ3MJ40 725 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 MAATS1Q7Z4T9 603 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 FAM212AQ96EL1 285 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 CETN3O15182 167 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 SLFN14P0C7P3 912 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 CASP14P31944 242 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 IFFO1Q0D2I5 559 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 DNAJC21Q5F1R6 531 aaKnown RBP16.74■□□□□ 0.27
CUX1-214ENST00000550008 RRAGAQ7L523 313 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 LINC00116Q8NCU8 138 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.74■□□□□ 0.278e-7■■■■■ 65.6
CUX1-214ENST00000550008 CD209Q9NNX6 404 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 PCDHA4Q9UN74 947 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 PPP2R2CQ9Y2T4 447 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 SORBS3O60504 671 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 ETF1P62495 437 aaKnown RBP16.74■□□□□ 0.27
CUX1-214ENST00000550008 TMTC3Q6ZXV5 915 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 ANKRD13CQ8N6S4 541 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 PLA2G12BQ9BX93 195 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 PCDHB13Q9Y5F0 798 aa16.74■□□□□ 0.27
CUX1-214ENST00000550008 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.74■□□□□ 0.27
CUX1-214ENST00000550008 HAUS3Q68CZ6 603 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 BBXQ8WY36 941 aaPredicted RBP16.73■□□□□ 0.27
CUX1-214ENST00000550008 PDLIM2Q96JY6 352 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 DNM3Q9UQ16 869 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 BAZ2BQ9UIF8 2168 aaKnown RBP16.73■□□□□ 0.27
CUX1-214ENST00000550008 PCP11498 1178 aaKnown RBP16.73■□□□□ 0.27
CUX1-214ENST00000550008 KLRK1P26718 216 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 GJC1P36383 396 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 SRPRBQ9Y5M8 271 aaKnown RBP16.73■□□□□ 0.27
CUX1-214ENST00000550008 GCNT3O95395 438 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 GPBP1Q86WP2 473 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 TMTC1Q8IUR5 882 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 IFT81Q8WYA0 676 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 BRIP1Q9BX63 1249 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 AFF2P51816 1311 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 RIMS1Q86UR5 1692 aaKnown RBP16.73■□□□□ 0.27
CUX1-214ENST00000550008 SETQ01105 290 aaPredicted RBP16.73■□□□□ 0.27
CUX1-214ENST00000550008 JAKMIP2Q96AA8 810 aa16.73■□□□□ 0.27
CUX1-214ENST00000550008 NAPGQ99747 312 aaPredicted RBP16.73■□□□□ 0.27
CUX1-214ENST00000550008 GSTTP1A0A1W2PQM5 241 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 CCDC169A6NNP5 214 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 POTEB2H3BUK9 544 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 CKAP4Q07065 602 aaKnown RBP16.72■□□□□ 0.27
CUX1-214ENST00000550008 TBC1D10BQ4KMP7 808 aaPredicted RBP16.72■□□□□ 0.27
CUX1-214ENST00000550008 SHC4Q6S5L8 630 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 TBC1D5Q92609 795 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 NAA15Q9BXJ9 866 aaKnown RBP16.72■□□□□ 0.27
CUX1-214ENST00000550008 PTPREP23469 700 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 MYCT1Q8N699 235 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 CNKSR2Q8WXI2 1034 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 TMEM47Q9BQJ4 181 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 DDX25Q9UHL0 483 aaKnown RBP16.72■□□□□ 0.27
CUX1-214ENST00000550008 GDAQ9Y2T3 454 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 MAGEA1P43355 309 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 CSRNP1Q96S65 589 aa16.72■□□□□ 0.27
CUX1-214ENST00000550008 PP2D1A8MPX8 630 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 PRR29P0C7W0 189 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 POTEJP0CG39 1038 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 POLD1P28340 1107 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 NKX1-1Q15270 411 aaPredicted RBP16.71■□□□□ 0.27
CUX1-214ENST00000550008 CLEC10AQ8IUN9 316 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 STAG2Q8N3U4 1231 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 TRIML1Q8N9V2 468 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 IGDCC4Q8TDY8 1250 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 TIGD1Q96MW7 591 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 MRPL44Q9H9J2 332 aaKnown RBP16.71■□□□□ 0.27
CUX1-214ENST00000550008 SHPRHQ149N8 1683 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 USP49Q70CQ1 688 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 GSDMAQ96QA5 445 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 OR8K1Q8NGG5 319 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 POLD4Q9HCU8 107 aa16.71■□□□□ 0.27
CUX1-214ENST00000550008 RFX7Q2KHR2 1363 aa16.71■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms