RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 WWC2Q6AWC2 1192 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 DZIP3Q86Y13 1208 aaKnown RBP9.84□□□□□ -0.83
TDP1-204ENST00000545686 GOLGA6L1Q8N7Z2 621 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 MB21D1Q8N884 522 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 TRERF1Q96PN7 1200 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 MTRQ99707 1265 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 BLZF1Q9H2G9 400 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 SUGCTQ9HAC7 445 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 ZBTB1Q9Y2K1 713 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 LUC7L2Q9Y383 392 aaKnown RBP9.84□□□□□ -0.83
TDP1-204ENST00000545686 SAR1BQ9Y6B6 198 aa9.84□□□□□ -0.83
TDP1-204ENST00000545686 LRRIQ3A6PVS8 624 aaPredicted RBP9.83□□□□□ -0.84
TDP1-204ENST00000545686 ABL1P00519 1130 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 PARP1P09874 1014 aaKnown RBP9.83□□□□□ -0.84
TDP1-204ENST00000545686 CALML3P27482 149 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 CDC25AP30304 524 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 STIM1Q13586 685 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 NCAPH2Q6IBW4 605 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 IQCEQ6IPM2 695 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 CTR9Q6PD62 1173 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 ADSSL1Q8N142 457 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 RETREG2Q8NC44 543 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 ZNF507Q8TCN5 953 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 NUP58Q9BVL2 599 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 TRIM34Q9BYJ4 488 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 EFCC1Q9HA90 598 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 MYH10P35580 1976 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 TTC26A0AVF1 554 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 KRT86O43790 486 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 ORC4O43929 436 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 SCG2P13521 617 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 IGHMBP2P38935 993 aaKnown RBP9.83□□□□□ -0.84
TDP1-204ENST00000545686 PRCPP42785 496 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 DNM2P50570 870 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 BCAMP50895 628 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 CCDC152Q4G0S7 254 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 CCDC170Q8IYT3 715 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 IQCDQ96DY2 449 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 CHP1Q99653 195 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 RIOK1Q9BRS2 568 aaKnown RBP9.83□□□□□ -0.84
TDP1-204ENST00000545686 FAM204AQ9H8W3 233 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 GUCA1BQ9UMX6 200 aa9.83□□□□□ -0.84
TDP1-204ENST00000545686 PRPF6O94906 941 aaKnown RBP9.82□□□□□ -0.84
TDP1-204ENST00000545686 TFRCP02786 760 aaKnown RBP9.82□□□□□ -0.84
TDP1-204ENST00000545686 CYLC1P35663 651 aaPredicted RBP9.82□□□□□ -0.84
TDP1-204ENST00000545686 STAT6P42226 847 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 NT5C2P49902 561 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 HERVK_113P62684 666 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 PFKFB3Q16875 520 aaPredicted RBP9.82□□□□□ -0.84
TDP1-204ENST00000545686 BRINP3Q76B58 766 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 ADGRA1Q86SQ6 560 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 IRF2BP1Q8IU81 584 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 AFAP1L1Q8TED9 768 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 COG1Q8WTW3 980 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 SDR42E1Q8WUS8 393 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 STAMQ92783 540 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 SH3GLB2Q9NR46 395 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 LCMT1Q9UIC8 334 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 HPCAL4Q9UM19 191 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 ROBO1Q9Y6N7 1651 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 COL1A1P02452 1464 aaPredicted RBP9.82□□□□□ -0.84
TDP1-204ENST00000545686 PSMA7O14818 248 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 RNF40O75150 1001 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 NLRP5P59047 1200 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 CDK17Q00537 523 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 IL17AQ16552 155 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 PARP10Q53GL7 1025 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 CCDC122Q5T0U0 273 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 SLC4A9Q96Q91 983 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 TTYH3Q9C0H2 523 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 MAGEF1Q9HAY2 307 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 DISC1Q9NRI5 854 aa9.82□□□□□ -0.84
TDP1-204ENST00000545686 GNL3LQ9NVN8 582 aaKnown RBP9.82□□□□□ -0.84
TDP1-204ENST00000545686 MAGEC2Q9UBF1 373 aaPredicted RBP9.82□□□□□ -0.84
TDP1-204ENST00000545686 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.82□□□□□ -0.84
TDP1-204ENST00000545686 ZC3H4Q9UPT8 1303 aaKnown RBP9.82□□□□□ -0.84
TDP1-204ENST00000545686 EIF3CLB5ME19 914 aaKnown RBP9.81□□□□□ -0.84
TDP1-204ENST00000545686 PPFIA4O75335 1185 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 IPO7O95373 1038 aaKnown RBP9.81□□□□□ -0.84
TDP1-204ENST00000545686 SYF2O95926 243 aaKnown RBP9.81□□□□□ -0.84
TDP1-204ENST00000545686 SRGNP10124 158 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 PPP1R2P41236 205 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 MAGEA9P43362 315 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 ITIH3Q06033 890 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 SF3B2Q13435 895 aaKnown RBP9.81□□□□□ -0.84
TDP1-204ENST00000545686 WDR59Q6PJI9 974 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 PIK3AP1Q6ZUJ8 805 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 KIAA1328Q86T90 577 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 C10orf67Q8IYJ2 551 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 FNBP4Q8N3X1 1017 aaPredicted RBP9.81□□□□□ -0.84
TDP1-204ENST00000545686 C4orf32Q8N8J7 132 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 JAKMIP2Q96AA8 810 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 PURBQ96QR8 312 aaKnown RBP9.81□□□□□ -0.84
TDP1-204ENST00000545686 EIF3CQ99613 913 aaKnown RBP9.81□□□□□ -0.84
TDP1-204ENST00000545686 TSGA10Q9BZW7 698 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 GDAQ9Y2T3 454 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 COL14A1Q05707 1796 aaKnown RBP9.81□□□□□ -0.84
TDP1-204ENST00000545686 hCG_1642624A0A1W2PR95 340 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 RHOBTB3O94955 611 aa9.81□□□□□ -0.84
TDP1-204ENST00000545686 ATP1A1P05023 1023 aaKnown RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms