RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CCDC194A0A1B0GVG4 234 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 CTAGE9A4FU28 777 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 ATP2B2Q01814 1243 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 LETM2Q2VYF4 491 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 NBPF5PQ86XG9 351 aaPredicted RBP16.95■□□□□ 0.3
USP28-214ENST00000545540 GJA10Q969M2 543 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 DRC1Q96MC2 740 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 PSMB7Q99436 277 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 MYH14Q7Z406 1995 aaKnown RBP16.95■□□□□ 0.3
USP28-214ENST00000545540 CYTH3O43739 400 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 TPM1P09493 284 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 PARP1P09874 1014 aaKnown RBP16.95■□□□□ 0.3
USP28-214ENST00000545540 EIF6P56537 245 aaKnown RBP16.95■□□□□ 0.3
USP28-214ENST00000545540 VSNL1P62760 191 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 UBE4AQ14139 1066 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 CCDC178Q5BJE1 867 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 SRGAP1Q7Z6B7 1085 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 TRIM47Q96LD4 638 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 BRIP1Q9BX63 1249 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 RBM28Q9NW13 759 aaKnown RBP16.95■□□□□ 0.3
USP28-214ENST00000545540 MYH6P13533 1939 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 GOLGA6L9A6NEM1 432 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 UBA7P41226 1012 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 LMAN1P49257 510 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 PFKFB3Q16875 520 aaPredicted RBP16.95■□□□□ 0.3
USP28-214ENST00000545540 NAALADL2Q58DX5 795 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 GSPT2Q8IYD1 628 aaKnown RBP16.95■□□□□ 0.3
USP28-214ENST00000545540 CDC23Q9UJX2 597 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 FCER1AP12319 257 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 UBA5Q9GZZ9 404 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 FAM170AA1A519 330 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 SLURP2P0DP57 97 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 USP17L2Q6R6M4 530 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 CLEC10AQ8IUN9 316 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 RABGGTAQ92696 567 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 PLEKHA4Q9H4M7 779 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 VPS18Q9P253 973 aa16.94■□□□□ 0.3
USP28-214ENST00000545540 REXO2Q9Y3B8 237 aaKnown RBP16.94■□□□□ 0.3
USP28-214ENST00000545540 CICQ96RK0 1608 aaPredicted RBP16.94■□□□□ 0.3
USP28-214ENST00000545540 TUBB4AP04350 444 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 ARHGAP25P42331 645 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 CNGA4Q8IV77 575 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.93■□□□□ 0.3
USP28-214ENST00000545540 ZNF185O15231 689 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 NFIXQ14938 502 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 JAKMIP3Q5VZ66 844 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 DTHD1Q6ZMT9 781 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 SMCR8Q8TEV9 937 aaPredicted RBP16.93■□□□□ 0.3
USP28-214ENST00000545540 CTAGE1Q96RT6 745 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.93■□□□□ 0.3
USP28-214ENST00000545540 MACROD2A1Z1Q3 448 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 MYO1BO43795 1136 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 GTPBP6O43824 516 aaPredicted RBP16.93■□□□□ 0.3
USP28-214ENST00000545540 TSPY3P0CV98 308 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 TSPY8P0CW00 308 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 CYP2C19P33261 490 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 ZNF652Q9Y2D9 606 aa16.93■□□□□ 0.3
USP28-214ENST00000545540 XIRP1Q702N8 1843 aaKnown RBP16.93■□□□□ 0.3
USP28-214ENST00000545540 TECP42680 631 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 KRT26Q7Z3Y9 468 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 AK7Q96M32 723 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 RCCD1A6NED2 376 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 ZNF658Q5TYW1 1059 aaPredicted RBP16.92■□□□□ 0.3
USP28-214ENST00000545540 FBXO33Q7Z6M2 555 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 ELOA2Q8IYF1 753 aaPredicted RBP16.92■□□□□ 0.3
USP28-214ENST00000545540 C4orf32Q8N8J7 132 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 NLRP3Q96P20 1036 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 EPN1Q9Y6I3 576 aaPredicted RBP16.92■□□□□ 0.3
USP28-214ENST00000545540 CCNT1O60563 726 aaKnown RBP16.92■□□□□ 0.3
USP28-214ENST00000545540 DDAH1O94760 285 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 PLEKP08567 350 aaPredicted RBP16.92■□□□□ 0.3
USP28-214ENST00000545540 CCDC102AQ96A19 550 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 DISC1Q9NRI5 854 aa16.92■□□□□ 0.3
USP28-214ENST00000545540 ANKRD65E5RJM6 399 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 GNPATO15228 680 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 CALM1P0DP23 149 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 CALM2P0DP24 149 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 CALM3P0DP25 149 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 DNA2P51530 1060 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 PIP4K2BP78356 416 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 DYMQ7RTS9 669 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 LACRTQ9GZZ8 138 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 BIN2Q9UBW5 565 aaPredicted RBP16.91■□□□□ 0.3
USP28-214ENST00000545540 RWDD2AQ9UIY3 292 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 PCDHA6Q9UN73 950 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 PCDHA8Q9Y5H6 950 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 NID2Q14112 1375 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 ATP1A1P05023 1023 aaKnown RBP16.91■□□□□ 0.3
USP28-214ENST00000545540 STK4Q13043 487 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 SETDB2Q96T68 719 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 NAPGQ99747 312 aaPredicted RBP16.91■□□□□ 0.3
USP28-214ENST00000545540 TMEM260Q9NX78 707 aa16.91■□□□□ 0.3
USP28-214ENST00000545540 PPARDQ03181 441 aa16.9■□□□□ 0.3
USP28-214ENST00000545540 TXNRD1Q16881 649 aa16.9■□□□□ 0.3
USP28-214ENST00000545540 CCDC122Q5T0U0 273 aa16.9■□□□□ 0.3
USP28-214ENST00000545540 RIN2Q8WYP3 895 aaPredicted RBP16.9■□□□□ 0.3
USP28-214ENST00000545540 SLC39A2Q9NP94 309 aa16.9■□□□□ 0.3
USP28-214ENST00000545540 RAD21O60216 631 aa16.9■□□□□ 0.3
USP28-214ENST00000545540 NDUFA10O95299 355 aa16.9■□□□□ 0.3
USP28-214ENST00000545540 PLCG1P19174 1290 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms