RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 FAM83AQ86UY5 434 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 MKL1Q969V6 931 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 NYAP2Q9P242 653 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 FRMPD2Q68DX3 1309 aaPredicted RBP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 CTAGE5O15320 804 aa16.38■□□□□ 0.21
VPS33A-209ENST00000544349 MARCKSP29966 332 aaPredicted RBP16.38■□□□□ 0.21
VPS33A-209ENST00000544349 ZNF280AP59817 542 aaPredicted RBP16.38■□□□□ 0.21
VPS33A-209ENST00000544349 ABCB5Q2M3G0 1257 aa16.38■□□□□ 0.21
VPS33A-209ENST00000544349 NBPF9Q3BBW0 867 aa16.38■□□□□ 0.21
VPS33A-209ENST00000544349 EARS2Q5JPH6 523 aaKnown RBP16.38■□□□□ 0.21
VPS33A-209ENST00000544349 WWC2Q6AWC2 1192 aa16.38■□□□□ 0.21
VPS33A-209ENST00000544349 JMYQ8N9B5 988 aa16.38■□□□□ 0.21
VPS33A-209ENST00000544349 RIOX1Q9H6W3 641 aa16.38■□□□□ 0.21
VPS33A-209ENST00000544349 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.38■□□□□ 0.21
VPS33A-209ENST00000544349 GOLGA6L6A8MZA4 724 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 GDF11O95390 407 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 EEF2P13639 858 aaKnown RBP16.37■□□□□ 0.21
VPS33A-209ENST00000544349 CALML3P27482 149 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 SEPT2Q15019 361 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 CCDC144BQ3MJ40 725 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 TYW1BQ6NUM6 668 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 DHX40Q8IX18 779 aaKnown RBP16.37■□□□□ 0.21
VPS33A-209ENST00000544349 RRP36Q96EU6 259 aaKnown RBP16.37■□□□□ 0.21
VPS33A-209ENST00000544349 UBA5Q9GZZ9 404 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 BARHL2Q9NY43 387 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 FAM205CA6NFA0 338 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 ZNF543Q08ER8 600 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 HSP90AA2PQ14568 343 aaPredicted RBP16.37■□□□□ 0.21
VPS33A-209ENST00000544349 RRP1BQ14684 758 aaKnown RBP16.37■□□□□ 0.21
VPS33A-209ENST00000544349 RBM26Q5T8P6 1007 aaKnown RBP16.37■□□□□ 0.21
VPS33A-209ENST00000544349 SIAH1Q8IUQ4 282 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 FAM177A1Q8N128 213 aaPredicted RBP16.37■□□□□ 0.21
VPS33A-209ENST00000544349 PCDHB6Q9Y5E3 794 aa16.37■□□□□ 0.21
VPS33A-209ENST00000544349 STXBP3O00186 592 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 RRP9O43818 475 aaKnown RBP16.36■□□□□ 0.21
VPS33A-209ENST00000544349 TPM3P06753 285 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 HEATR3Q7Z4Q2 680 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 CCDC148Q8NFR7 591 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 DPF2Q92785 391 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 PIGSQ96S52 555 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 VAT1LQ9HCJ6 419 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 PCDHA4Q9UN74 947 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 JAG1P78504 1218 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 ICA1Q05084 483 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 GPATCH4Q5T3I0 446 aaKnown RBP16.36■□□□□ 0.21
VPS33A-209ENST00000544349 DRC7Q8IY82 874 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 BLIDQ8IZY5 108 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 TMEM39BQ9GZU3 492 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 GPCPD1Q9NPB8 672 aa16.36■□□□□ 0.21
VPS33A-209ENST00000544349 SEC63Q9UGP8 760 aaKnown RBP16.36■□□□□ 0.21
VPS33A-209ENST00000544349 ADAMTS3O15072 1205 aa16.35■□□□□ 0.21
VPS33A-209ENST00000544349 GH2P01242 217 aa16.35■□□□□ 0.21
VPS33A-209ENST00000544349 CMA1P23946 247 aa16.35■□□□□ 0.21
VPS33A-209ENST00000544349 GMPSP49915 693 aaPredicted RBP16.35■□□□□ 0.21
VPS33A-209ENST00000544349 NOM1Q5C9Z4 860 aaKnown RBP16.35■□□□□ 0.21
VPS33A-209ENST00000544349 GALNT17Q6IS24 598 aa16.35■□□□□ 0.21
VPS33A-209ENST00000544349 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.35■□□□□ 0.21
VPS33A-209ENST00000544349 HOMER1Q86YM7 354 aa16.35■□□□□ 0.21
VPS33A-209ENST00000544349 PGAP2Q9UHJ9 254 aa16.35■□□□□ 0.21
VPS33A-209ENST00000544349 GJA3Q9Y6H8 435 aa16.35■□□□□ 0.21
VPS33A-209ENST00000544349 TBC1D12O60347 775 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 CAVIN2O95810 425 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 EGFRP00533 1210 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 ATP2B1P20020 1258 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 SARM1Q6SZW1 724 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 DAGLBQ8NCG7 672 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 CEP131Q9UPN4 1083 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 M0R2N6 131 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 CUTAO60888 179 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 CCDC96Q2M329 555 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 CDAN1Q8IWY9 1227 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 MICALL2Q8IY33 904 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 AOPEPQ8N6M6 819 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 MYRIPQ8NFW9 859 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 TSC1Q92574 1164 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 ZMYND12Q9H0C1 365 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 ANO10Q9NW15 660 aa16.34■□□□□ 0.21
VPS33A-209ENST00000544349 CNOT7Q9UIV1 285 aaKnown RBP16.34■□□□□ 0.21
VPS33A-209ENST00000544349 TRIM75PA6NK02 468 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 GOLGA6L19H0YKK7 550 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 PFKFB1P16118 471 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 TNNI2P48788 182 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 DPCR1Q3MIW9 517 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 TTBK2Q6IQ55 1244 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 PIK3AP1Q6ZUJ8 805 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 KCTD1Q719H9 257 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 KRI1Q8N9T8 703 aaKnown RBP16.33■□□□□ 0.21
VPS33A-209ENST00000544349 CCDC12Q8WUD4 166 aaPredicted RBP16.33■□□□□ 0.21
VPS33A-209ENST00000544349 DCAF4Q8WV16 495 aa16.33■□□□□ 0.21
VPS33A-209ENST00000544349 FHDC1Q9C0D6 1143 aaPredicted RBP16.33■□□□□ 0.21
VPS33A-209ENST00000544349 MORC2Q9Y6X9 1032 aaPredicted RBP16.33■□□□□ 0.21
VPS33A-209ENST00000544349 ZNF541Q9H0D2 1346 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 hCG_1984214I3L0E3 225 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 CDC25BP30305 580 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 TRAPPC10P48553 1259 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 NAPAP54920 295 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 ARID5BQ14865 1188 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 SLFN13Q68D06 897 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 SHC4Q6S5L8 630 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms