RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 LRRC37A2A6NM11 1700 aa21.43■■□□□ 1.02
CLSTN3-214ENST00000542663 CHD9Q3L8U1 2897 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 DNAJC25-GNG10A0A024R161 153 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 MYADML2A6NDP7 307 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 RAD21O60216 631 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 DNAJB2P25686 324 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 COPB2P35606 906 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 IRX5P78411 483 aaPredicted RBP21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 UBE3CQ15386 1083 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 MAMDC4Q6UXC1 1216 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 RPAP2Q8IXW5 612 aaPredicted RBP21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 AMOTL1Q8IY63 956 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 MSL3Q8N5Y2 521 aaKnown RBP21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 SYNGAP1Q96PV0 1343 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 HAUS7Q99871 368 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 PRDM6Q9NQX0 595 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 TBX21Q9UL17 535 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 SLC4A4Q9Y6R1 1079 aa21.42■■□□□ 1.02
CLSTN3-214ENST00000542663 TTC28Q96AY4 2481 aa21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 DCDC2CA8MYV0 355 aa21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 ADCY6O43306 1168 aa21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 HNRNPUQ00839 825 aaKnown RBP eCLIP21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 KCNA10Q16322 511 aa21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 SLF1Q9BQI6 1058 aa21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 PUS7LQ9H0K6 701 aaKnown RBP21.41■■□□□ 1.02
CLSTN3-214ENST00000542663 LCTP09848 1927 aa21.4■■□□□ 1.02
CLSTN3-214ENST00000542663 MOXD2PA6NHM9 499 aa21.4■■□□□ 1.02
CLSTN3-214ENST00000542663 TIMP1P01033 207 aa21.4■■□□□ 1.02
CLSTN3-214ENST00000542663 SNRNP48Q6IEG0 339 aaKnown RBP21.4■■□□□ 1.02
CLSTN3-214ENST00000542663 NUP133Q8WUM0 1156 aa21.4■■□□□ 1.02
CLSTN3-214ENST00000542663 TEX13BQ9BXU2 312 aa21.4■■□□□ 1.02
CLSTN3-214ENST00000542663 FAM184BQ9ULE4 1060 aa21.4■■□□□ 1.02
CLSTN3-214ENST00000542663 REV3LO60673 3130 aa21.4■■□□□ 1.02
CLSTN3-214ENST00000542663 RAB11FIP3O75154 756 aa21.39■■□□□ 1.01
CLSTN3-214ENST00000542663 RASA1P20936 1047 aa21.39■■□□□ 1.01
CLSTN3-214ENST00000542663 C16orf59Q7L2K0 433 aa21.39■■□□□ 1.01
CLSTN3-214ENST00000542663 ZNF576Q9H609 170 aa21.39■■□□□ 1.01
CLSTN3-214ENST00000542663 DUSP11O75319 330 aaKnown RBP21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 HMMRO75330 724 aa21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 CST5P28325 142 aaPredicted RBP21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 CDK7P50613 346 aa21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 SYMPKQ92797 1274 aaKnown RBP21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 DDRGK1Q96HY6 314 aa21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 FGD4Q96M96 766 aa21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 ZBTB40Q9NUA8 1239 aa21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 ARPP21Q9UBL0 812 aaPredicted RBP21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 ZHX1Q9UKY1 873 aaPredicted RBP21.38■■□□□ 1.01
CLSTN3-214ENST00000542663 ELP1O95163 1332 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 F5H6K3 240 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 ATP2A1O14983 1001 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 NDUFB10O96000 172 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 KLRC3Q07444 240 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 RASIP1Q5U651 963 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 MFSD5Q6N075 450 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 ZNF467Q7Z7K2 595 aaPredicted RBP21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 TIFAQ96CG3 184 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 DDX11Q96FC9 970 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 NYAP2Q9P242 653 aa21.37■■□□□ 1.01
CLSTN3-214ENST00000542663 ASGR1P07306 291 aa21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 PBX2P40425 430 aa21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 ACVR2BQ13705 512 aa21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 SBK1Q52WX2 424 aa21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 TMEM240Q5SV17 173 aa21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 STK11IPQ8N1F8 1099 aa21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 PRPF38AQ8NAV1 312 aaKnown RBP21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 UPF3AQ9H1J1 476 aaKnown RBP21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 CHD7Q9P2D1 2997 aa21.36■■□□□ 1.01
CLSTN3-214ENST00000542663 MROH7Q68CQ1 1323 aa21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 GRXCR1A8MXD5 290 aa21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 CTAGE5O15320 804 aa21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 C6orf222P0C671 652 aaPredicted RBP21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 CCDC144BQ3MJ40 725 aa21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 TJAP1Q5JTD0 557 aa21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 CPXCR1Q8N123 301 aa21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 GLT1D1Q96MS3 346 aa21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 STRBPQ96SI9 672 aaKnown RBP21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 PBX4Q9BYU1 374 aa21.35■■□□□ 1.01
CLSTN3-214ENST00000542663 IGKV6D-41A0A0C4DH26 115 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 GSG1L2A8MUP6 293 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 CSF2RAP15509 400 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 SLC4A3P48751 1232 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 GJA9P57773 515 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 PPIGQ13427 754 aaKnown RBP eCLIP21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 ZSCAN25Q6NSZ9 544 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 PCSK9Q8NBP7 692 aaKnown RBP21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 KATNBL1Q9H079 304 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 ABHD16BQ9H3Z7 469 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 SLC38A10Q9HBR0 1119 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 RAVER2Q9HCJ3 691 aaKnown RBP21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 COG6Q9Y2V7 657 aa21.34■■□□□ 1.01
CLSTN3-214ENST00000542663 ARVCFO00192 962 aa21.33■■□□□ 1.01
CLSTN3-214ENST00000542663 ARMCX2Q7L311 632 aa21.33■■□□□ 1.01
CLSTN3-214ENST00000542663 FAM126BQ8IXS8 530 aa21.33■■□□□ 1.01
CLSTN3-214ENST00000542663 CLIP2Q9UDT6 1046 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms