RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ITIH6Q6UXX5 1313 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 IGKV6D-41A0A0C4DH26 115 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 A0A1B0GTH6 734 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 FAM205CA6NFA0 338 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 ARHGAP6O43182 974 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 SLC26A4O43511 780 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 SNHG28P0DPA3 235 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 HDLBPQ00341 1268 aaKnown RBP11.18□□□□□ -0.62
SS18-205ENST00000542420 CDKAL1Q5VV42 579 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 MAPKAPK5Q8IW41 473 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 RRP36Q96EU6 259 aaKnown RBP11.18□□□□□ -0.62
SS18-205ENST00000542420 DYNLL2Q96FJ2 89 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 NAA15Q9BXJ9 866 aaKnown RBP11.18□□□□□ -0.62
SS18-205ENST00000542420 EHD4Q9H223 541 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 RIOX1Q9H6W3 641 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 PCDHA6Q9UN73 950 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 PCDHA8Q9Y5H6 950 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 RIOK3O14730 519 aaKnown RBP11.18□□□□□ -0.62
SS18-205ENST00000542420 ZSCAN12O43309 604 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 GRIK5Q16478 980 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 TXNRD1Q16881 649 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 SPECC1LQ69YQ0 1117 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 WWC2Q6AWC2 1192 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 TEX2Q8IWB9 1127 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 KIF18AQ8NI77 898 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 CCDC51Q96ER9 411 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 RWDD2AQ9UIY3 292 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 DAGLAQ9Y4D2 1042 aa11.18□□□□□ -0.62
SS18-205ENST00000542420 SIPA1L1O43166 1804 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 SYNRGQ9UMZ2 1314 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 A0A087X0B3 334 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 VWA3AA6NCI4 1184 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 KLRF2D3W0D1 207 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 FOXN1O15353 648 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 STX10O60499 249 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 SRGNP10124 158 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 ATP1A3P13637 1013 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 HSPA1LP34931 641 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 NR1I3Q14994 352 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 SPECC1Q5M775 1068 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 FAM182BQ5T319 152 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 DTHD1Q6ZMT9 781 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 AKT1S1Q96B36 256 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 EPSTI1Q96J88 318 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 TMX4Q9H1E5 349 aaPredicted RBP11.17□□□□□ -0.62
SS18-205ENST00000542420 SEC63Q9UGP8 760 aaKnown RBP11.17□□□□□ -0.62
SS18-205ENST00000542420 PHLPP2Q6ZVD8 1323 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 USP17L3A6NCW0 530 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 USP17L4A6NCW7 530 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 CYTH3O43739 400 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 EVX2Q03828 476 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 TRIM14Q14142 442 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 FILIP1LQ4L180 1135 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 COBLL1Q53SF7 1204 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 ZNF658Q5TYW1 1059 aaPredicted RBP11.17□□□□□ -0.62
SS18-205ENST00000542420 USP49Q70CQ1 688 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 USP17L1Q7RTZ2 530 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 STAG2Q8N3U4 1231 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 ANKRD7Q92527 254 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 FBXW7Q969H0 707 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 CCDC17Q96LX7 622 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 C16orf45Q96MC5 204 aaPredicted RBP11.17□□□□□ -0.62
SS18-205ENST00000542420 NAP1L4Q99733 375 aaKnown RBP11.17□□□□□ -0.62
SS18-205ENST00000542420 GLT8D2Q9H1C3 349 aa11.17□□□□□ -0.62
SS18-205ENST00000542420 LRRC10BA6NIK2 292 aa11.16□□□□□ -0.62
SS18-205ENST00000542420 PPP1R3GB7ZBB8 358 aa11.16□□□□□ -0.62
SS18-205ENST00000542420 ATP2B1P20020 1258 aa11.16□□□□□ -0.62
SS18-205ENST00000542420 CDK11BP21127 795 aaKnown RBP11.16□□□□□ -0.62
SS18-205ENST00000542420 FMR1Q06787 632 aaKnown RBP eCLIP11.16□□□□□ -0.62
SS18-205ENST00000542420 NONOQ15233 471 aaKnown RBP eCLIP11.16□□□□□ -0.62
SS18-205ENST00000542420 E4F1Q66K89 784 aaPredicted RBP11.16□□□□□ -0.62
SS18-205ENST00000542420 NOC3LQ8WTT2 800 aaKnown RBP11.16□□□□□ -0.62
SS18-205ENST00000542420 MASTLQ96GX5 879 aa11.16□□□□□ -0.62
SS18-205ENST00000542420 PANX2Q96RD6 677 aa11.16□□□□□ -0.62
SS18-205ENST00000542420 DISC1Q9NRI5 854 aa11.16□□□□□ -0.62
SS18-205ENST00000542420 LIMA1Q9UHB6 759 aaKnown RBP11.16□□□□□ -0.62
SS18-205ENST00000542420 C6orf229H3BNL8 230 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 FECHP22830 423 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 ARID5BQ14865 1188 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 SOGA3Q5TF21 947 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 MCTP2Q6DN12 878 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 PODNQ7Z5L7 613 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 PDILTQ8N807 584 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 ANKRD20A12PQ8NF67 263 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 PPP1R13BQ96KQ4 1090 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 ZC3H12CQ9C0D7 883 aaKnown RBP11.15□□□□□ -0.62
SS18-205ENST00000542420 MTMR4Q9NYA4 1195 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 STX8Q9UNK0 236 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 hCG_1642624A0A1W2PR95 340 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 WNT7AO00755 349 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 MCM7P33993 719 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 PBX1P40424 430 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 SLC35G1Q2M3R5 365 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 ISM2Q6H9L7 571 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 STYK1Q6J9G0 422 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 FOXR2Q6PJQ5 311 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 DPF2Q92785 391 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 CCDC47Q96A33 483 aaKnown RBP11.15□□□□□ -0.62
SS18-205ENST00000542420 SRRTQ9BXP5 876 aaKnown RBP11.15□□□□□ -0.62
SS18-205ENST00000542420 L2HGDHQ9H9P8 463 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms