RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	DCAF4	Q8WV16	495 aa		10.85	□□□□□ -0.67
SNHG1-215	ENST00000540904	TNKS	O95271	1327 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	FRMPD2	Q68DX3	1309 aa	Predicted RBP	10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	HTT	P42858	3142 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	SLC27A2	O14975	620 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	PDHB	P11177	359 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	PTPRE	P23469	700 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	STAT3	P40763	770 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	RGS2	P41220	211 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	SLC4A3	P48751	1232 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	MORN1	Q5T089	497 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	STOX1	Q6ZVD7	989 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	CYB5R4	Q7L1T6	521 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	FAM160B2	Q86V87	743 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	CPXCR1	Q8N123	301 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	ENAH	Q8N8S7	591 aa	Predicted RBP	10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	SHCBP1	Q8NEM2	672 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	REPS2	Q8NFH8	660 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	PXYLP1	Q8TE99	480 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	TEX13B	Q9BXU2	312 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	MROH8	Q9H579	483 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	KAT14	Q9H8E8	782 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	GPCPD1	Q9NPB8	672 aa		10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	ZNF214	Q9UL59	606 aa	Predicted RBP	10.84	□□□□□ -0.67
SNHG1-215	ENST00000540904	SLC15A5	A6NIM6	579 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	SLC25A27	O95847	323 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	INHA	P05111	366 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	SLC16A2	P36021	539 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	UBXN2A	P68543	259 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	MAP2K5	Q13163	448 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	GRB14	Q14449	540 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	NECTIN1	Q15223	517 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	MTFR1	Q15390	333 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	IFIT1B	Q5T764	474 aa	Known RBP	10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	CREB3L3	Q68CJ9	461 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	SNRNP48	Q6IEG0	339 aa	Known RBP	10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	TTBK2	Q6IQ55	1244 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	CHST3	Q7LGC8	479 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	RIOX2	Q8IUF8	465 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	PNMA1	Q8ND90	353 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	NCOA7	Q8NI08	942 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	USP6NL	Q92738	828 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	APBA2	Q99767	749 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	TMEM106C	Q9BVX2	250 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	SLC38A10	Q9HBR0	1119 aa		10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	RAVER2	Q9HCJ3	691 aa	Known RBP	10.83	□□□□□ -0.68
SNHG1-215	ENST00000540904	LAMA4	Q16363	1823 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	POTEF	A5A3E0	1075 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	IFIT3	O14879	490 aa	Known RBP	10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	ATP2A1	O14983	1001 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	STRN	O43815	780 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	PLA2G6	O60733	806 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	HMGCR	P04035	888 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	FCER1A	P12319	257 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	XRCC5	P13010	732 aa	Known RBP	10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	CCL5	P13501	91 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	ZKSCAN1	P17029	563 aa	Predicted RBP	10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	ADORA2A	P29274	412 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	SNAP25	P60880	206 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	ZNF543	Q08ER8	600 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	CCL14	Q16627	93 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	DPP9	Q86TI2	863 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	TRIB2	Q92519	343 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	ANKS1A	Q92625	1134 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	MMP19	Q99542	508 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	PRR12	Q9ULL5	1215 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	RLF	Q13129	1914 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	MYH4	Q9Y623	1939 aa		10.82	□□□□□ -0.68
SNHG1-215	ENST00000540904	ERICH2	A1L162	156 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	GOLGA8H	P0CJ92	632 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	SNHG28	P0DPA3	235 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	FDX1	P10109	184 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	COPB2	P35606	906 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	OAZ1	P54368	228 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	TRIM32	Q13049	653 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	KCTD2	Q14681	263 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	SART3	Q15020	963 aa	Known RBP	10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	SEC23A	Q15436	765 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	TMEM67	Q5HYA8	995 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	SYDE2	Q5VT97	1194 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	RNF20	Q5VTR2	975 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	CCDC174	Q6PII3	467 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	MB21D2	Q8IYB1	491 aa	Predicted RBP	10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	TRMT44	Q8IYL2	757 aa	Known RBP	10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	ABRA	Q8N0Z2	381 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	NPLOC4	Q8TAT6	608 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	RNF208	Q9H0X6	261 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	UNC93B1	Q9H1C4	597 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	HOMER2	Q9NSB8	354 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	RIPK3	Q9Y572	518 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904		A0A0G2JMZ2	1700 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	MGAM	O43451	1857 aa		10.81	□□□□□ -0.68
SNHG1-215	ENST00000540904	COBL	O75128	1261 aa		10.8	□□□□□ -0.68
SNHG1-215	ENST00000540904	HOXC6	P09630	235 aa		10.8	□□□□□ -0.68
SNHG1-215	ENST00000540904	EN2	P19622	333 aa	Predicted RBP	10.8	□□□□□ -0.68
SNHG1-215	ENST00000540904	ANTXR2	P58335	489 aa		10.8	□□□□□ -0.68
SNHG1-215	ENST00000540904	WTAP	Q15007	396 aa		10.8	□□□□□ -0.68
SNHG1-215	ENST00000540904	GPATCH4	Q5T3I0	446 aa	Known RBP	10.8	□□□□□ -0.68
SNHG1-215	ENST00000540904	BTNL9	Q6UXG8	535 aa		10.8	□□□□□ -0.68
SNHG1-215	ENST00000540904	AGBL1	Q96MI9	1066 aa		10.8	□□□□□ -0.68

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