RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 NKX3-2P78367 333 aa8.81□□□□□ -1
YBX3-209ENST00000540747 KCTD2Q14681 263 aa8.81□□□□□ -1
YBX3-209ENST00000540747 UBE3CQ15386 1083 aa8.81□□□□□ -1
YBX3-209ENST00000540747 CTR9Q6PD62 1173 aa8.81□□□□□ -1
YBX3-209ENST00000540747 ZNF467Q7Z7K2 595 aaPredicted RBP8.81□□□□□ -1
YBX3-209ENST00000540747 KIF1BPQ96EK5 621 aa8.81□□□□□ -1
YBX3-209ENST00000540747 DNAJC2Q99543 621 aaKnown RBP8.81□□□□□ -1
YBX3-209ENST00000540747 HAUS7Q99871 368 aa8.81□□□□□ -1
YBX3-209ENST00000540747 UPF3AQ9H1J1 476 aaKnown RBP8.81□□□□□ -1
YBX3-209ENST00000540747 KANSL2Q9H9L4 492 aa8.81□□□□□ -1
YBX3-209ENST00000540747 PAG1Q9NWQ8 432 aa8.81□□□□□ -1
YBX3-209ENST00000540747 MYH8P13535 1937 aa8.81□□□□□ -1
YBX3-209ENST00000540747 IGKV6D-41A0A0C4DH26 115 aa8.8□□□□□ -1
YBX3-209ENST00000540747 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.8□□□□□ -1
YBX3-209ENST00000540747 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.8□□□□□ -1
YBX3-209ENST00000540747 DUSP11O75319 330 aaKnown RBP8.8□□□□□ -1
YBX3-209ENST00000540747 TIMP1P01033 207 aa8.8□□□□□ -1
YBX3-209ENST00000540747 MYCNP04198 464 aaPredicted RBP8.8□□□□□ -1
YBX3-209ENST00000540747 RAG1P15918 1043 aa8.8□□□□□ -1
YBX3-209ENST00000540747 IRX5P78411 483 aaPredicted RBP8.8□□□□□ -1
YBX3-209ENST00000540747 TMEM240Q5SV17 173 aa8.8□□□□□ -1
YBX3-209ENST00000540747 FAM83BQ5T0W9 1011 aa8.8□□□□□ -1
YBX3-209ENST00000540747 CLASRPQ8N2M8 674 aaKnown RBP8.8□□□□□ -1
YBX3-209ENST00000540747 PANK1Q8TE04 598 aa8.8□□□□□ -1
YBX3-209ENST00000540747 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.8□□□□□ -11e-7■■■□□ 15.8
YBX3-209ENST00000540747 TEX13BQ9BXU2 312 aa8.8□□□□□ -1
YBX3-209ENST00000540747 KATNBL1Q9H079 304 aa8.8□□□□□ -1
YBX3-209ENST00000540747 TMEM39AQ9NV64 488 aa8.8□□□□□ -1
YBX3-209ENST00000540747 RIPK3Q9Y572 518 aa8.8□□□□□ -1
YBX3-209ENST00000540747 XIRP2A4UGR9 3374 aa8.8□□□□□ -1
YBX3-209ENST00000540747 ELP1O95163 1332 aa8.8□□□□□ -1
YBX3-209ENST00000540747 NDUFB10O96000 172 aa8.79□□□□□ -1
YBX3-209ENST00000540747 RASA1P20936 1047 aa8.79□□□□□ -1
YBX3-209ENST00000540747 GJA9P57773 515 aa8.79□□□□□ -1
YBX3-209ENST00000540747 KCNA10Q16322 511 aa8.79□□□□□ -1
YBX3-209ENST00000540747 SBK1Q52WX2 424 aa8.79□□□□□ -1
YBX3-209ENST00000540747 TJAP1Q5JTD0 557 aa8.79□□□□□ -1
YBX3-209ENST00000540747 MFSD5Q6N075 450 aa8.79□□□□□ -1
YBX3-209ENST00000540747 RPAP2Q8IXW5 612 aaPredicted RBP8.79□□□□□ -1
YBX3-209ENST00000540747 SYMPKQ92797 1274 aaKnown RBP8.79□□□□□ -1
YBX3-209ENST00000540747 TIFAQ96CG3 184 aa8.79□□□□□ -1
YBX3-209ENST00000540747 NUP88Q99567 741 aaPredicted RBP8.79□□□□□ -1
YBX3-209ENST00000540747 SLF1Q9BQI6 1058 aa8.79□□□□□ -1
YBX3-209ENST00000540747 PUS7LQ9H0K6 701 aaKnown RBP8.79□□□□□ -1
YBX3-209ENST00000540747 ZNF576Q9H609 170 aa8.79□□□□□ -1
YBX3-209ENST00000540747 GOPCQ9HD26 462 aa8.79□□□□□ -1
YBX3-209ENST00000540747 STARD7Q9NQZ5 370 aa8.79□□□□□ -1
YBX3-209ENST00000540747 ZBTB40Q9NUA8 1239 aa8.79□□□□□ -1
YBX3-209ENST00000540747 NYAP2Q9P242 653 aa8.79□□□□□ -1
YBX3-209ENST00000540747 FAM184BQ9ULE4 1060 aa8.79□□□□□ -1
YBX3-209ENST00000540747 CNPY2Q9Y2B0 182 aa8.79□□□□□ -1
YBX3-209ENST00000540747 MYO9BQ13459 2157 aa8.78□□□□□ -1
YBX3-209ENST00000540747 DCDC2CA8MYV0 355 aa8.78□□□□□ -1
YBX3-209ENST00000540747 RAB11FIP3O75154 756 aa8.78□□□□□ -1
YBX3-209ENST00000540747 CD4P01730 458 aa8.78□□□□□ -1
YBX3-209ENST00000540747 IFIT2P09913 472 aaKnown RBP8.78□□□□□ -1
YBX3-209ENST00000540747 PBX2P40425 430 aa8.78□□□□□ -1
YBX3-209ENST00000540747 ADGRE1Q14246 886 aa8.78□□□□□ -1
YBX3-209ENST00000540747 AKNAD1Q5T1N1 836 aa8.78□□□□□ -1
YBX3-209ENST00000540747 SNRNP48Q6IEG0 339 aaKnown RBP8.78□□□□□ -1
YBX3-209ENST00000540747 FAM126BQ8IXS8 530 aa8.78□□□□□ -1
YBX3-209ENST00000540747 MIER1Q8N108 512 aa8.78□□□□□ -1
YBX3-209ENST00000540747 SLC43A3Q8NBI5 491 aa8.78□□□□□ -1
YBX3-209ENST00000540747 NUP133Q8WUM0 1156 aa8.78□□□□□ -1
YBX3-209ENST00000540747 VWCEQ96DN2 955 aa8.78□□□□□ -1
YBX3-209ENST00000540747 STRBPQ96SI9 672 aaKnown RBP8.78□□□□□ -1
YBX3-209ENST00000540747 PBX4Q9BYU1 374 aa8.78□□□□□ -1
YBX3-209ENST00000540747 BOLA2Q9H3K6 86 aa8.78□□□□□ -1
YBX3-209ENST00000540747 SLC38A10Q9HBR0 1119 aa8.78□□□□□ -1
YBX3-209ENST00000540747 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.78□□□□□ -1
YBX3-209ENST00000540747 ARPP21Q9UBL0 812 aaPredicted RBP8.78□□□□□ -1
YBX3-209ENST00000540747 MYH7P12883 1935 aa8.78□□□□□ -1
YBX3-209ENST00000540747 ASTN1O14525 1302 aa8.78□□□□□ -1
YBX3-209ENST00000540747 MROH7Q68CQ1 1323 aa8.78□□□□□ -1
YBX3-209ENST00000540747 PLIN4Q96Q06 1357 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 GSG1L2A8MUP6 293 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 GRXCR1A8MXD5 290 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 F5H6K3 240 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 ARVCFO00192 962 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 ASGR1P07306 291 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 CSF2RAP15509 400 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 KLRC3Q07444 240 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 PPIGQ13427 754 aaKnown RBP eCLIP8.77□□□□□ -1.01
YBX3-209ENST00000540747 ACVR2BQ13705 512 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 GIMAP6Q6P9H5 292 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 SAMD1Q6SPF0 538 aaPredicted RBP8.77□□□□□ -1.01
YBX3-209ENST00000540747 PRPF38AQ8NAV1 312 aaKnown RBP8.77□□□□□ -1.01
YBX3-209ENST00000540747 MKL1Q969V6 931 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.77□□□□□ -1.01
YBX3-209ENST00000540747 ABHD16BQ9H3Z7 469 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 EPB41L4AQ9HCS5 686 aaPredicted RBP8.77□□□□□ -1.01
YBX3-209ENST00000540747 ZHX1Q9UKY1 873 aaPredicted RBP8.77□□□□□ -1.01
YBX3-209ENST00000540747 SYNPO2Q9UMS6 1093 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 SLC4A4Q9Y6R1 1079 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 MCM3APO60318 1980 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 LRRC37A2A6NM11 1700 aa8.77□□□□□ -1.01
YBX3-209ENST00000540747 A0A0U1RQG5 324 aaPredicted RBP8.76□□□□□ -1.01
YBX3-209ENST00000540747 APBB1O00213 710 aa8.76□□□□□ -1.01
YBX3-209ENST00000540747 TNFRSF10AO00220 468 aa8.76□□□□□ -1.01
YBX3-209ENST00000540747 HMMRO75330 724 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms