RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CLEC3AO75596 197 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 HSPA1LP34931 641 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 ZNF76P36508 570 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 NBPF9Q3BBW0 867 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 RNF111Q6ZNA4 994 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 SLITRK4Q8IW52 837 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 ANKS4BQ8N8V4 417 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 DAGLBQ8NCG7 672 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 TOX2Q96NM4 488 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 SPON2Q9BUD6 331 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 C19orf44Q9H6X5 657 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 CWC22Q9HCG8 908 aaKnown RBP6.43□□□□□ -1.38
CD44-235ENST00000532339 CCDC9Q9Y3X0 531 aaKnown RBP6.43□□□□□ -1.38
CD44-235ENST00000532339 ABCC2Q92887 1545 aa6.43□□□□□ -1.38
CD44-235ENST00000532339 BCORL1Q5H9F3 1711 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 KRTAP4-8A0A0G2JLE6 195 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 MEIS3P2A8K0S8 358 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 NFIBO00712 420 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 POLR2BP30876 1174 aaKnown RBP6.42□□□□□ -1.38
CD44-235ENST00000532339 LDLRAD1Q5T700 205 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 ANKLE2Q86XL3 938 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 ZNF655Q8N720 491 aaPredicted RBP6.42□□□□□ -1.38
CD44-235ENST00000532339 SLC6A17Q9H1V8 727 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 ZNF281Q9Y2X9 895 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 ADAMTS12P58397 1594 aa6.42□□□□□ -1.38
CD44-235ENST00000532339 ABCA5Q8WWZ7 1642 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 SSU72P8A0A1W2PR75 194 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 TMEM253P0C7T8 217 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 NME1P15531 152 aaKnown RBP6.41□□□□□ -1.38
CD44-235ENST00000532339 PCBP3P57721 371 aaKnown RBP6.41□□□□□ -1.38
CD44-235ENST00000532339 SNX17Q15036 470 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 KRTAP19-4Q3LI73 84 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 TMC3Q7Z5M5 1100 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 IRF2BP1Q8IU81 584 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 USHBP1Q8N6Y0 703 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 LINC01599Q8WXQ3 324 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 TCTN2Q96GX1 697 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 EAF1Q96JC9 268 aaPredicted RBP6.41□□□□□ -1.38
CD44-235ENST00000532339 SLC26A8Q96RN1 970 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 BACH2Q9BYV9 841 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 METTL5Q9NRN9 209 aaKnown RBP6.41□□□□□ -1.38
CD44-235ENST00000532339 FHAD1B1AJZ9 1412 aa6.41□□□□□ -1.38
CD44-235ENST00000532339 TNFRSF10CO14798 259 aa6.4□□□□□ -1.38
CD44-235ENST00000532339 RPL10P27635 214 aaKnown RBP6.4□□□□□ -1.38
CD44-235ENST00000532339 TIGD5Q53EQ6 642 aa6.4□□□□□ -1.38
CD44-235ENST00000532339 USP48Q86UV5 1035 aa6.4□□□□□ -1.38
CD44-235ENST00000532339 ZSCAN18Q8TBC5 510 aaPredicted RBP6.4□□□□□ -1.38
CD44-235ENST00000532339 ANTXR1Q9H6X2 564 aa6.4□□□□□ -1.38
CD44-235ENST00000532339 GPR160Q9UJ42 338 aa6.4□□□□□ -1.38
CD44-235ENST00000532339 TCFL5Q9UL49 500 aa6.4□□□□□ -1.38
CD44-235ENST00000532339 YBX2Q9Y2T7 364 aaKnown RBP6.4□□□□□ -1.38
CD44-235ENST00000532339 STRCQ7RTU9 1775 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 SIGLEC6O43699 453 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 PRAMEF1O95521 474 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 KRT1P04264 644 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 C1QTNF9P0C862 333 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 IMPDH2P12268 514 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 MFAP1P55081 439 aaKnown RBP6.39□□□□□ -1.39
CD44-235ENST00000532339 FANCCQ00597 558 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 SNW1Q13573 536 aaKnown RBP6.39□□□□□ -1.39
CD44-235ENST00000532339 WAPLQ7Z5K2 1190 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 CILP2Q8IUL8 1156 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 LINC00116Q8NCU8 138 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 ZNF512BQ96KM6 892 aaPredicted RBP6.39□□□□□ -1.39
CD44-235ENST00000532339 SLC6A18Q96N87 628 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 G6PC3Q9BUM1 346 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 FOXP3Q9BZS1 431 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 PRDM14Q9GZV8 571 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 EBF1Q9UH73 591 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 ZMYM5Q9UJ78 669 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 ARID4BQ4LE39 1312 aaPredicted RBP6.39□□□□□ -1.39
CD44-235ENST00000532339 MAGI3Q5TCQ9 1506 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 RIMS1Q86UR5 1692 aaKnown RBP6.39□□□□□ -1.39
CD44-235ENST00000532339 CFAP43Q8NDM7 1665 aa6.39□□□□□ -1.39
CD44-235ENST00000532339 MED14OSP0DP75 135 aa6.38□□□□□ -1.39
CD44-235ENST00000532339 GLDCP23378 1020 aa6.38□□□□□ -1.39
CD44-235ENST00000532339 TMEM192Q8IY95 271 aa6.38□□□□□ -1.39
CD44-235ENST00000532339 INTS4Q96HW7 963 aaKnown RBP6.38□□□□□ -1.39
CD44-235ENST00000532339 DHRS1Q96LJ7 313 aa6.38□□□□□ -1.39
CD44-235ENST00000532339 MKRN2Q9H000 416 aaKnown RBP6.38□□□□□ -1.39
CD44-235ENST00000532339 KCNK12Q9HB15 430 aa6.38□□□□□ -1.39
CD44-235ENST00000532339 RGS17Q9UGC6 210 aaPredicted RBP6.38□□□□□ -1.39
CD44-235ENST00000532339 ZNRF3Q9ULT6 936 aa6.38□□□□□ -1.39
CD44-235ENST00000532339 CCDC88BA6NC98 1476 aa6.38□□□□□ -1.39
CD44-235ENST00000532339 ABCA10Q8WWZ4 1543 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 TCAF2A6NFQ2 919 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 SYPP08247 313 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 ENDOUP21128 410 aaKnown RBP6.37□□□□□ -1.39
CD44-235ENST00000532339 CFPP27918 469 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 KIR2DL1P43626 348 aaPredicted RBP6.37□□□□□ -1.39
CD44-235ENST00000532339 KIR2DL2P43627 348 aaPredicted RBP6.37□□□□□ -1.39
CD44-235ENST00000532339 INTS3Q68E01 1043 aaKnown RBP6.37□□□□□ -1.39
CD44-235ENST00000532339 SPOCD1Q6ZMY3 1216 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 LRRC56Q8IYG6 542 aaPredicted RBP6.37□□□□□ -1.39
CD44-235ENST00000532339 KCNN1Q92952 543 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 RNF34Q969K3 372 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 MAP6Q96JE9 813 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 SLC9A7Q96T83 725 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 CHST7Q9NS84 486 aa6.37□□□□□ -1.39
CD44-235ENST00000532339 PCDHB12Q9Y5F1 795 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms