RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 FAM47AQ5JRC9 791 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 SLFN13Q68D06 897 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 SLC39A5Q6ZMH5 540 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 RNF180Q86T96 592 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 REPS2Q8NFH8 660 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 NEDD1Q8NHV4 660 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 MKL1Q969V6 931 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 FERMT2Q96AC1 680 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 PRDM5Q9NQX1 630 aaPredicted RBP17.51■□□□□ 0.39
VPS28-215ENST00000531924 SYNPO2Q9UMS6 1093 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 BMP3P12645 472 aa17.5■□□□□ 0.39
VPS28-215ENST00000531924 LRRC41Q15345 812 aa17.5■□□□□ 0.39
VPS28-215ENST00000531924 ANKRD35Q8N283 1001 aa17.5■□□□□ 0.39
VPS28-215ENST00000531924 GMCL1P1Q8NEA9 526 aa17.5■□□□□ 0.39
VPS28-215ENST00000531924 CRBNQ96SW2 442 aa17.5■□□□□ 0.39
VPS28-215ENST00000531924 RLFQ13129 1914 aa17.5■□□□□ 0.39
VPS28-215ENST00000531924 TSPY2A6NKD2 308 aa17.49■□□□□ 0.39
VPS28-215ENST00000531924 AKR1A1P14550 325 aa17.49■□□□□ 0.39
VPS28-215ENST00000531924 GPR153Q6NV75 609 aa17.49■□□□□ 0.39
VPS28-215ENST00000531924 MSL3Q8N5Y2 521 aaKnown RBP17.49■□□□□ 0.39
VPS28-215ENST00000531924 DEFB123Q8N688 67 aa17.49■□□□□ 0.39
VPS28-215ENST00000531924 EVI5LQ96CN4 794 aa17.49■□□□□ 0.39
VPS28-215ENST00000531924 RAVER2Q9HCJ3 691 aaKnown RBP17.49■□□□□ 0.39
VPS28-215ENST00000531924 FBXO40Q9UH90 709 aa17.49■□□□□ 0.39
VPS28-215ENST00000531924 ATP2A1O14983 1001 aa17.48■□□□□ 0.39
VPS28-215ENST00000531924 FDX1P10109 184 aa17.48■□□□□ 0.39
VPS28-215ENST00000531924 CHURC1Q8WUH1 139 aa17.48■□□□□ 0.39
VPS28-215ENST00000531924 SLC38A10Q9HBR0 1119 aa17.48■□□□□ 0.39
VPS28-215ENST00000531924 ZHX1Q9UKY1 873 aaPredicted RBP17.48■□□□□ 0.39
VPS28-215ENST00000531924 STX8Q9UNK0 236 aa17.48■□□□□ 0.39
VPS28-215ENST00000531924 RIPK3Q9Y572 518 aa17.48■□□□□ 0.39
VPS28-215ENST00000531924 SZT2Q5T011 3432 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 TMEM232C9JQI7 657 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 PGK1P00558 417 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 TAL1P17542 331 aaPredicted RBP17.47■□□□□ 0.39
VPS28-215ENST00000531924 SLC1A4P43007 532 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 STAT2P52630 851 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 OAZ1P54368 228 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 TRIM60Q495X7 471 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 CCDC129Q6ZRS4 1044 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 CHST13Q8NET6 341 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 CHMP4CQ96CF2 233 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 TOMM22Q9NS69 142 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 HOMER2Q9NSB8 354 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 FAM184BQ9ULE4 1060 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 SYNGAP1Q96PV0 1343 aa17.47■□□□□ 0.39
VPS28-215ENST00000531924 DNAH12Q6ZR08 3092 aa17.46■□□□□ 0.39
VPS28-215ENST00000531924 PLIN4Q96Q06 1357 aa17.46■□□□□ 0.39
VPS28-215ENST00000531924 RANBP6O60518 1105 aaKnown RBP17.46■□□□□ 0.39
VPS28-215ENST00000531924 ZNF865P0CJ78 1059 aaPredicted RBP17.46■□□□□ 0.39
VPS28-215ENST00000531924 CTDSPL2Q05D32 466 aa17.46■□□□□ 0.39
VPS28-215ENST00000531924 FAM160B2Q86V87 743 aa17.46■□□□□ 0.39
VPS28-215ENST00000531924 GMCL1Q96IK5 515 aa17.46■□□□□ 0.39
VPS28-215ENST00000531924 PHF24Q9UPV7 400 aa17.46■□□□□ 0.39
VPS28-215ENST00000531924 FRMPD3Q5JV73 1810 aa17.45■□□□□ 0.38
VPS28-215ENST00000531924 MCCP23508 829 aa17.45■□□□□ 0.38
VPS28-215ENST00000531924 HDAC1Q13547 482 aaPredicted RBP17.45■□□□□ 0.38
VPS28-215ENST00000531924 ZNF467Q7Z7K2 595 aaPredicted RBP17.45■□□□□ 0.38
VPS28-215ENST00000531924 STAG1Q8WVM7 1258 aa17.45■□□□□ 0.38
VPS28-215ENST00000531924 YTHDC1Q96MU7 727 aaKnown RBP17.45■□□□□ 0.38
VPS28-215ENST00000531924 SPC25Q9HBM1 224 aa17.45■□□□□ 0.38
VPS28-215ENST00000531924 HELLSQ9NRZ9 838 aa17.45■□□□□ 0.38
VPS28-215ENST00000531924 MTMR7Q9Y216 660 aa17.45■□□□□ 0.38
VPS28-215ENST00000531924 DNAJC25-GNG10A0A024R161 153 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 TRIM6-TRIM34B2RNG4 842 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 PDE1AP54750 535 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 TLE2Q04725 743 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 SNX17Q15036 470 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 MAMDC4Q6UXC1 1216 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 SLC17A8Q8NDX2 589 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 NUP133Q8WUM0 1156 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 ACAD9Q9H845 621 aa17.44■□□□□ 0.38
VPS28-215ENST00000531924 GREB1LQ9C091 1923 aaPredicted RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 COL11A1P12107 1806 aaPredicted RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 PARP14Q460N5 1801 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 A0A1W2PQ45 241 aaPredicted RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 A0A1W2PQY0 241 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 POTEB2H3BUK9 544 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 PQBP1O60828 265 aaKnown RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 SNAI1O95863 264 aaPredicted RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 AAMPQ13685 434 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 ACVR2BQ13705 512 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 CCDC96Q2M329 555 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 MCMDC2Q4G0Z9 681 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 RRP12Q5JTH9 1297 aaKnown RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 C1orf53Q5VUE5 145 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 Q7L0L9 218 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 VTI1AQ96AJ9 217 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 LENG1Q96BZ8 264 aaPredicted RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 TSEN34Q9BSV6 310 aaKnown RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.43■□□□□ 0.38
VPS28-215ENST00000531924 TACC3Q9Y6A5 838 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 SALL3Q9BXA9 1300 aa17.43■□□□□ 0.38
VPS28-215ENST00000531924 TKFCQ3LXA3 575 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 VPS53Q5VIR6 699 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 RCSD1Q6JBY9 416 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 CCDC174Q6PII3 467 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 KCTD1Q719H9 257 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 NOL8Q76FK4 1167 aaKnown RBP17.42■□□□□ 0.38
VPS28-215ENST00000531924 BADQ92934 168 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms