RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PDHBP11177 359 aa24.45■■□□□ 1.5
VPS28-212ENST00000530836 GUCY1A2P33402 732 aa24.45■■□□□ 1.5
VPS28-212ENST00000530836 GNL2Q13823 731 aaKnown RBP24.45■■□□□ 1.5
VPS28-212ENST00000530836 PKN1Q16512 942 aa24.45■■□□□ 1.5
VPS28-212ENST00000530836 KLHL40Q2TBA0 621 aa24.45■■□□□ 1.5
VPS28-212ENST00000530836 ELP1O95163 1332 aa24.45■■□□□ 1.5
VPS28-212ENST00000530836 USP17L5A8MUK1 530 aa24.44■■□□□ 1.5
VPS28-212ENST00000530836 IRF6O14896 467 aa24.44■■□□□ 1.5
VPS28-212ENST00000530836 MBD3O95983 291 aa24.44■■□□□ 1.5
VPS28-212ENST00000530836 ICA1Q05084 483 aa24.44■■□□□ 1.5
VPS28-212ENST00000530836 PFKFB3Q16875 520 aaPredicted RBP24.44■■□□□ 1.5
VPS28-212ENST00000530836 GPATCH4Q5T3I0 446 aaKnown RBP24.44■■□□□ 1.5
VPS28-212ENST00000530836 OTUD7BQ6GQQ9 843 aa24.44■■□□□ 1.5
VPS28-212ENST00000530836 STAG2Q8N3U4 1231 aa24.44■■□□□ 1.5
VPS28-212ENST00000530836 CHAMP1Q96JM3 812 aa24.44■■□□□ 1.5
VPS28-212ENST00000530836 AFG3L2Q9Y4W6 797 aa24.44■■□□□ 1.5
VPS28-212ENST00000530836 SCG2P13521 617 aa24.43■■□□□ 1.5
VPS28-212ENST00000530836 U2AF2P26368 475 aaKnown RBP eCLIP24.43■■□□□ 1.5
VPS28-212ENST00000530836 CCDC84Q86UT8 332 aaPredicted RBP24.43■■□□□ 1.5
VPS28-212ENST00000530836 SH3GLB2Q9NR46 395 aa24.43■■□□□ 1.5
VPS28-212ENST00000530836 DDX49Q9Y6V7 483 aaKnown RBP24.43■■□□□ 1.5
VPS28-212ENST00000530836 EEF2P13639 858 aaKnown RBP24.43■■□□□ 1.5
VPS28-212ENST00000530836 SEPT2Q15019 361 aa24.43■■□□□ 1.5
VPS28-212ENST00000530836 LRRC47Q8N1G4 583 aaKnown RBP24.43■■□□□ 1.5
VPS28-212ENST00000530836 MS4A4AQ96JQ5 239 aa24.43■■□□□ 1.5
VPS28-212ENST00000530836 FOXP1Q9H334 677 aaPredicted RBP24.43■■□□□ 1.5
VPS28-212ENST00000530836 KCNH4Q9UQ05 1017 aa24.43■■□□□ 1.5
VPS28-212ENST00000530836 CXCL11O14625 94 aa24.42■■□□□ 1.5
VPS28-212ENST00000530836 FIBPO43427 364 aa24.42■■□□□ 1.5
VPS28-212ENST00000530836 GTF2A2P52657 109 aa24.42■■□□□ 1.5
VPS28-212ENST00000530836 ATP2B2Q01814 1243 aa24.42■■□□□ 1.5
VPS28-212ENST00000530836 REM2Q8IYK8 340 aaPredicted RBP24.42■■□□□ 1.5
VPS28-212ENST00000530836 WDR18Q9BV38 432 aa24.42■■□□□ 1.5
VPS28-212ENST00000530836 BRMS1Q9HCU9 246 aa24.42■■□□□ 1.5
VPS28-212ENST00000530836 GJB4Q9NTQ9 266 aa24.42■■□□□ 1.5
VPS28-212ENST00000530836 MANSC4A6NHS7 340 aaPredicted RBP24.41■■□□□ 1.5
VPS28-212ENST00000530836 MYH6P13533 1939 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 UBE2HP62256 183 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 FAM173BQ6P4H8 233 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 USP17L2Q6R6M4 530 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 ZNF280CQ8ND82 737 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 GMCL1P1Q8NEA9 526 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 DCAF4Q8WV16 495 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 SPATA32Q96LK8 384 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 AS3MTQ9HBK9 375 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 MTMR7Q9Y216 660 aa24.41■■□□□ 1.5
VPS28-212ENST00000530836 INHBEP58166 350 aa24.4■■□□□ 1.5
VPS28-212ENST00000530836 ZNF543Q08ER8 600 aa24.4■■□□□ 1.5
VPS28-212ENST00000530836 SNAPC2Q13487 334 aa24.4■■□□□ 1.5
VPS28-212ENST00000530836 PHF20Q9BVI0 1012 aa24.4■■□□□ 1.5
VPS28-212ENST00000530836 GDPD2Q9HCC8 539 aa24.4■■□□□ 1.5
VPS28-212ENST00000530836 ARHGEF10LQ9HCE6 1279 aa24.4■■□□□ 1.5
VPS28-212ENST00000530836 TCHHQ07283 1943 aa24.39■■□□□ 1.5
VPS28-212ENST00000530836 SPP2Q13103 211 aa24.39■■□□□ 1.5
VPS28-212ENST00000530836 MYSM1Q5VVJ2 828 aa24.39■■□□□ 1.5
VPS28-212ENST00000530836 CLEC10AQ8IUN9 316 aa24.39■■□□□ 1.5
VPS28-212ENST00000530836 JMYQ8N9B5 988 aa24.39■■□□□ 1.5
VPS28-212ENST00000530836 RRP36Q96EU6 259 aaKnown RBP24.39■■□□□ 1.5
VPS28-212ENST00000530836 RIOX1Q9H6W3 641 aa24.39■■□□□ 1.5
VPS28-212ENST00000530836 TESPA1A2RU30 521 aaPredicted RBP24.39■■□□□ 1.49
VPS28-212ENST00000530836 hCG_1984214I3L0E3 225 aa24.39■■□□□ 1.49
VPS28-212ENST00000530836 TM4SF4P48230 202 aa24.39■■□□□ 1.49
VPS28-212ENST00000530836 NOSTRINQ8IVI9 506 aa24.39■■□□□ 1.49
VPS28-212ENST00000530836 DIS3L2Q8IYB7 885 aaKnown RBP24.39■■□□□ 1.49
VPS28-212ENST00000530836 ZNF713Q8N859 430 aaPredicted RBP24.39■■□□□ 1.49
VPS28-212ENST00000530836 SEC63Q9UGP8 760 aaKnown RBP24.39■■□□□ 1.49
VPS28-212ENST00000530836 MYH4Q9Y623 1939 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 TRIM75PA6NK02 468 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 CYTH3O43739 400 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 GOLGA8HP0CJ92 632 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 CETPP11597 493 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 CALML3P27482 149 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 SREBF2Q12772 1141 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 SIAH1Q8IUQ4 282 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 CCDC148Q8NFR7 591 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 LEO1Q8WVC0 666 aaPredicted RBP24.38■■□□□ 1.49
VPS28-212ENST00000530836 SH2D4AQ9H788 454 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 VPS54Q9P1Q0 977 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 TFIP11Q9UBB9 837 aaKnown RBP24.38■■□□□ 1.49
VPS28-212ENST00000530836 PCNTO95613 3336 aa24.38■■□□□ 1.49
VPS28-212ENST00000530836 DOCK1Q14185 1865 aa24.37■■□□□ 1.49
VPS28-212ENST00000530836 KIF28PB7ZC32 967 aa24.37■■□□□ 1.49
VPS28-212ENST00000530836 GALNT17Q6IS24 598 aa24.37■■□□□ 1.49
VPS28-212ENST00000530836 CCDC12Q8WUD4 166 aaPredicted RBP24.37■■□□□ 1.49
VPS28-212ENST00000530836 GMCL1Q96IK5 515 aa24.37■■□□□ 1.49
VPS28-212ENST00000530836 POLR3EQ9NVU0 708 aa24.37■■□□□ 1.49
VPS28-212ENST00000530836 RTEL1Q9NZ71 1219 aa24.37■■□□□ 1.49
VPS28-212ENST00000530836 KCNJ14Q9UNX9 436 aa24.37■■□□□ 1.49
VPS28-212ENST00000530836 CCL15-CCL14A0A0B4J2E2 113 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 hCG_1642624A0A1W2PR95 340 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 KRT2P35908 639 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 SLC1A4P43007 532 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 CCL15Q16663 113 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 SLFN13Q68D06 897 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 BRI3BPQ8WY22 251 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 RCOR1Q9UKL0 485 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 MYH15Q9Y2K3 1946 aa24.36■■□□□ 1.49
VPS28-212ENST00000530836 A0A0G2JLL6 359 aaPredicted RBP24.35■■□□□ 1.49
VPS28-212ENST00000530836 USP17L10C9JJH3 530 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 BACE1P56817 501 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms