RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PPP1R14BQ96C90 147 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 CFAP53Q96M91 514 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 UCN2Q96RP3 112 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 RUFY1Q96T51 708 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 MPHOSPH6Q99547 160 aaKnown RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 YIPF2Q9BWQ6 316 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 YIPF3Q9GZM5 350 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 EPC1Q9H2F5 836 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 KAT14Q9H8E8 782 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 ZWILCHQ9H900 591 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 SPATA7Q9P0W8 599 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 TPCN1Q9ULQ1 816 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 TPX2Q9ULW0 747 aaKnown RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 NOB1Q9ULX3 412 aaKnown RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 G3BP2Q9UN86 482 aaKnown RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 FRMD4BQ9Y2L6 1034 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 C15orf41Q9Y2V0 281 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 TMEM98Q9Y2Y6 226 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 GRIN2DO15399 1336 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 EFCAB6Q5THR3 1501 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 RAPGEF6Q8TEU7 1601 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 VWA3AA6NCI4 1184 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 A6NHS1 94 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 F8VZ95 297 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 BIN1O00499 593 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 CBFA2T2O43439 604 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 KIF5CO60282 957 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 CEP104O60308 925 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 PHACTR2O75167 634 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 WDHD1O75717 1129 aaPredicted RBP6.51□□□□□ -1.37
CD44-225ENST00000527326 ADAMTS2O95450 1211 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 VIMP08670 466 aaKnown RBP6.51□□□□□ -1.37
CD44-225ENST00000527326 PDHBP11177 359 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 ZFXP17010 805 aaPredicted RBP6.51□□□□□ -1.37
CD44-225ENST00000527326 SDSP20132 328 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 SH3BGRP55822 239 aaPredicted RBP6.51□□□□□ -1.37
CD44-225ENST00000527326 GNG11P61952 73 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 PIP4K2BP78356 416 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 DNM1Q05193 864 aaKnown RBP6.51□□□□□ -1.37
CD44-225ENST00000527326 CCDC15Q0P6D6 951 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 NEXNQ0ZGT2 675 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 RIPK1Q13546 671 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 STIM1Q13586 685 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 WHAMMP3Q1A5X7 153 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 CCDC121Q6ZUS5 278 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 TMC6Q7Z403 805 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 CYP2U1Q7Z449 544 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 KIAA0825Q8IV33 1275 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 FUKQ8N0W3 1084 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 RASSF8Q8NHQ8 419 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 CXorf38Q8TB03 319 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 SSH1Q8WYL5 1049 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 CNKSR1Q969H4 720 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 TBC1D31Q96DN5 1066 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 SCLT1Q96NL6 688 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 BPIFA3Q9BQP9 254 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 LUC7LQ9NQ29 371 aaKnown RBP6.51□□□□□ -1.37
CD44-225ENST00000527326 DACT1Q9NYF0 836 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 RTEL1Q9NZ71 1219 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 ZFATQ9P243 1243 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 CDC23Q9UJX2 597 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 TMCO1Q9UM00 188 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 HPCAL4Q9UM19 191 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 PHF24Q9UPV7 400 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 ATP8A1Q9Y2Q0 1164 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 SPATA31D1Q6ZQQ2 1576 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 PREX1Q8TCU6 1659 aa6.51□□□□□ -1.37
CD44-225ENST00000527326 PTCH1Q13635 1447 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 RICTORQ6R327 1708 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 TCHHQ07283 1943 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 CROCC2H7BZ55 1655 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 NRXN1Q9ULB1 1477 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 LRRD1A4D1F6 860 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 LRRIQ3A6PVS8 624 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 STXBP3O00186 592 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 ZBTB7BO15156 539 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 MYO1BO43795 1136 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 PPP1R12BO60237 982 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 SMIM24O75264 130 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 ATP6V1G1O75348 118 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 NPTXRO95502 500 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 RPSAP08865 295 aaKnown RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 VIL1P09327 827 aaKnown RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 CSB-PGBD3P0DP91 1061 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 HARSP12081 509 aaKnown RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 PDCP20941 246 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 EIF4BP23588 611 aaKnown RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 LMOD1P29536 600 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 ALDH3A1P30838 453 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 PSMC1P62191 440 aaKnown RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 LMNB2Q03252 620 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 IFT88Q13099 833 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 USP4Q13107 963 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 CLN3Q13286 438 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 XRCC4Q13426 336 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 MYBPC3Q14896 1274 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 POSTNQ15063 836 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 ENOX2Q16206 610 aaKnown RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 CAMK4Q16566 473 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 KIAA0753Q2KHM9 967 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms