RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 YEATS4O95619 227 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 ECE1P42892 770 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 MAP3K11Q16584 847 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 ACER1Q8TDN7 264 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 CDCA5Q96FF9 252 aa21.7■■□□□ 1.06
VPS28-207ENST00000526977 STK38Q15208 465 aa21.69■■□□□ 1.06
VPS28-207ENST00000526977 PKN1Q16512 942 aa21.69■■□□□ 1.06
VPS28-207ENST00000526977 NOL9Q5SY16 702 aaKnown RBP21.69■■□□□ 1.06
VPS28-207ENST00000526977 ANO1Q5XXA6 986 aa21.69■■□□□ 1.06
VPS28-207ENST00000526977 RASGRP2Q7LDG7 609 aa21.69■■□□□ 1.06
VPS28-207ENST00000526977 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.69■■□□□ 1.067e-9■□□□□ 10.3
VPS28-207ENST00000526977 TNMDQ9H2S6 317 aa21.69■■□□□ 1.06
VPS28-207ENST00000526977 FRMPD2Q68DX3 1309 aaPredicted RBP21.69■■□□□ 1.06
VPS28-207ENST00000526977 CYTH3O43739 400 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 NDUFB10O96000 172 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 CCDC96Q2M329 555 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 ZKSCAN4Q969J2 545 aaPredicted RBP21.68■■□□□ 1.06
VPS28-207ENST00000526977 GOLPH3LQ9H4A5 285 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 RIOX1Q9H6W3 641 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 AS3MTQ9HBK9 375 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 MMP1P03956 469 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 MAP3K9P80192 1104 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 GNL2Q13823 731 aaKnown RBP21.68■■□□□ 1.06
VPS28-207ENST00000526977 PFKFB3Q16875 520 aaPredicted RBP21.68■■□□□ 1.06
VPS28-207ENST00000526977 ADALQ6DHV7 355 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 RBM43Q6ZSC3 357 aaKnown RBP21.68■■□□□ 1.06
VPS28-207ENST00000526977 KCNG4Q8TDN1 519 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 GLIS2Q9BZE0 524 aaPredicted RBP21.68■■□□□ 1.06
VPS28-207ENST00000526977 VCPKMTQ9H867 229 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 GPCPD1Q9NPB8 672 aa21.68■■□□□ 1.06
VPS28-207ENST00000526977 SPTLC2O15270 562 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 IREB2P48200 963 aaKnown RBP21.67■■□□□ 1.06
VPS28-207ENST00000526977 SNW1Q13573 536 aaKnown RBP21.67■■□□□ 1.06
VPS28-207ENST00000526977 DLK2Q6UY11 383 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 WDR18Q9BV38 432 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.67■■□□□ 1.06
VPS28-207ENST00000526977 KCNJ14Q9UNX9 436 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 BMP3P12645 472 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 SCG2P13521 617 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 PTPRAP18433 802 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 PRKG1Q13976 671 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 SF3A1Q15459 793 aaKnown RBP21.67■■□□□ 1.06
VPS28-207ENST00000526977 KCTD1Q719H9 257 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 ENGASEQ8NFI3 743 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 RRP36Q96EU6 259 aaKnown RBP21.67■■□□□ 1.06
VPS28-207ENST00000526977 UBA5Q9GZZ9 404 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 KIAA1683Q9H0B3 1180 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 FZD1Q9UP38 647 aa21.67■■□□□ 1.06
VPS28-207ENST00000526977 BTBD18B2RXH4 712 aa21.66■■□□□ 1.06
VPS28-207ENST00000526977 CCDC192P0DO97 292 aa21.66■■□□□ 1.06
VPS28-207ENST00000526977 SLC35G1Q2M3R5 365 aa21.66■■□□□ 1.06
VPS28-207ENST00000526977 LDHDQ86WU2 507 aa21.66■■□□□ 1.06
VPS28-207ENST00000526977 CKAP2LQ8IYA6 745 aa21.66■■□□□ 1.06
VPS28-207ENST00000526977 FEZ1Q99689 392 aa21.66■■□□□ 1.06
VPS28-207ENST00000526977 A0A1W2PQ27 194 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 A0A1W2PQ64 194 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 A0A1W2PQD8 194 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 hCG_1642624A0A1W2PR95 340 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 SLC39A14Q15043 492 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 SAFBQ15424 915 aaKnown RBP eCLIP21.65■■□□□ 1.06
VPS28-207ENST00000526977 UVSSAQ2YD98 709 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 FSIP1Q8NA03 581 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 SEC63Q9UGP8 760 aaKnown RBP21.65■■□□□ 1.06
VPS28-207ENST00000526977 USP17L10C9JJH3 530 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 POTEIP0CG38 1075 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 POTEJP0CG39 1038 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 FAM177A1Q8N128 213 aaPredicted RBP21.65■■□□□ 1.06
VPS28-207ENST00000526977 LPAR1Q92633 364 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 RTN4Q9NQC3 1192 aaKnown RBP21.65■■□□□ 1.06
VPS28-207ENST00000526977 SH3GLB2Q9NR46 395 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 CSADQ9Y600 493 aa21.65■■□□□ 1.06
VPS28-207ENST00000526977 ATAD5Q96QE3 1844 aa21.64■■□□□ 1.06
VPS28-207ENST00000526977 USP14P54578 494 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 TTBK2Q6IQ55 1244 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 CCDC73Q6ZRK6 1079 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 CCDC84Q86UT8 332 aaPredicted RBP21.64■■□□□ 1.05
VPS28-207ENST00000526977 NOSTRINQ8IVI9 506 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 DIS3L2Q8IYB7 885 aaKnown RBP21.64■■□□□ 1.05
VPS28-207ENST00000526977 ZNF280CQ8ND82 737 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 PIBF1Q8WXW3 757 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 PDLIM2Q96JY6 352 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 FOXP1Q9H334 677 aaPredicted RBP21.64■■□□□ 1.05
VPS28-207ENST00000526977 CPVLQ9H3G5 476 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 VAT1LQ9HCJ6 419 aa21.64■■□□□ 1.05
VPS28-207ENST00000526977 FAM160A1Q05DH4 1040 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 MAP1SQ66K74 1059 aaPredicted RBP21.63■■□□□ 1.05
VPS28-207ENST00000526977 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.63■■□□□ 1.05
VPS28-207ENST00000526977 ADGRF4Q8IZF3 695 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 SPICE1Q8N0Z3 855 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 MRPS27Q92552 414 aaKnown RBP21.63■■□□□ 1.05
VPS28-207ENST00000526977 SHISA4Q96DD7 197 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 SPP2Q13103 211 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 PTPAQ15257 358 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 AXDND1Q5T1B0 1012 aaPredicted RBP21.63■■□□□ 1.05
VPS28-207ENST00000526977 BTNL9Q6UXG8 535 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 ARMC9Q7Z3E5 817 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 ANKRD13AQ8IZ07 590 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 JMJD4Q9H9V9 463 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 ZHX2Q9Y6X8 837 aa21.63■■□□□ 1.05
VPS28-207ENST00000526977 DOCK1Q14185 1865 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms