RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 HLA-DOAP06340 250 aa18.13■□□□□ 0.49
USH1C-204ENST00000526313 LONP1P36776 959 aaKnown RBP18.13■□□□□ 0.49
USH1C-204ENST00000526313 EN1Q05925 392 aaPredicted RBP18.13■□□□□ 0.49
USH1C-204ENST00000526313 LRMPQ12912 555 aa18.13■□□□□ 0.49
USH1C-204ENST00000526313 GRAMD1CQ8IYS0 662 aa18.13■□□□□ 0.49
USH1C-204ENST00000526313 ZNF713Q8N859 430 aaPredicted RBP18.13■□□□□ 0.49
USH1C-204ENST00000526313 CCDC17Q96LX7 622 aa18.13■□□□□ 0.49
USH1C-204ENST00000526313 IMPACTQ9P2X3 320 aa18.13■□□□□ 0.49
USH1C-204ENST00000526313 SIPA1L1O43166 1804 aa18.12■□□□□ 0.49
USH1C-204ENST00000526313 SMC2O95347 1197 aa18.12■□□□□ 0.49
USH1C-204ENST00000526313 LRRC8AQ8IWT6 810 aa18.12■□□□□ 0.49
USH1C-204ENST00000526313 ZFPM1Q8IX07 1006 aa18.12■□□□□ 0.49
USH1C-204ENST00000526313 C17orf53Q8N3J3 647 aaPredicted RBP18.12■□□□□ 0.49
USH1C-204ENST00000526313 NAP1L5Q96NT1 182 aaPredicted RBP18.12■□□□□ 0.49
USH1C-204ENST00000526313 XPO4Q9C0E2 1151 aaKnown RBP18.12■□□□□ 0.49
USH1C-204ENST00000526313 DHX36Q9H2U1 1008 aaKnown RBP18.12■□□□□ 0.49
USH1C-204ENST00000526313 SERPINA10Q9UK55 444 aa18.12■□□□□ 0.49
USH1C-204ENST00000526313 GNA11P29992 359 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 FANCCQ00597 558 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 DPYDQ12882 1025 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 KIAA0825Q8IV33 1275 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 PIGSQ96S52 555 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 IFNKQ9P0W0 207 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 FAM198AQ9UFP1 575 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 LAD1O00515 517 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 NAPAP54920 295 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 PPP4R3BQ5MIZ7 849 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 KRT25Q7Z3Z0 450 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 ENOX1Q8TC92 643 aaKnown RBP18.11■□□□□ 0.49
USH1C-204ENST00000526313 C6orf50Q9HD87 102 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.11■□□□□ 0.49
USH1C-204ENST00000526313 DACH1Q9UI36 760 aa18.11■□□□□ 0.49
USH1C-204ENST00000526313 SMCO2A6NFE2 343 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 LMOD1P29536 600 aaPredicted RBP18.1■□□□□ 0.49
USH1C-204ENST00000526313 PRPHP41219 470 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 PDXDC2PQ6P474 469 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 IQUBQ8NA54 791 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 SUPT20HQ8NEM7 779 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 DNAJC18Q9H819 358 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 SEC63Q9UGP8 760 aaKnown RBP18.1■□□□□ 0.49
USH1C-204ENST00000526313 PCDHAC2Q9Y5I4 1007 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 ATP1A3P13637 1013 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 ERCC5P28715 1186 aaPredicted RBP18.1■□□□□ 0.49
USH1C-204ENST00000526313 ZNF543Q08ER8 600 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 INF2Q27J81 1249 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 LRRC47Q8N1G4 583 aaKnown RBP18.1■□□□□ 0.49
USH1C-204ENST00000526313 GSDMAQ96QA5 445 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 UBA5Q9GZZ9 404 aa18.1■□□□□ 0.49
USH1C-204ENST00000526313 GSDMDP57764 484 aa18.09■□□□□ 0.49
USH1C-204ENST00000526313 AOC3Q16853 763 aa18.09■□□□□ 0.49
USH1C-204ENST00000526313 GRIPAP1Q4V328 841 aa18.09■□□□□ 0.49
USH1C-204ENST00000526313 MKL1Q969V6 931 aa18.09■□□□□ 0.49
USH1C-204ENST00000526313 MED15Q96RN5 788 aa18.09■□□□□ 0.49
USH1C-204ENST00000526313 TMEM60Q9H2L4 133 aa18.09■□□□□ 0.49
USH1C-204ENST00000526313 FANCLQ9NW38 375 aa18.09■□□□□ 0.49
USH1C-204ENST00000526313 PI4KBQ9UBF8 816 aa18.09■□□□□ 0.49
USH1C-204ENST00000526313 ZNF18P17022 549 aa18.08■□□□□ 0.49
USH1C-204ENST00000526313 FMR1Q06787 632 aaKnown RBP eCLIP18.08■□□□□ 0.49
USH1C-204ENST00000526313 ORC2Q13416 577 aaPredicted RBP18.08■□□□□ 0.49
USH1C-204ENST00000526313 SH3BP5LQ7L8J4 393 aa18.08■□□□□ 0.49
USH1C-204ENST00000526313 HOMER1Q86YM7 354 aa18.08■□□□□ 0.49
USH1C-204ENST00000526313 ARID5BQ14865 1188 aa18.08■□□□□ 0.48
USH1C-204ENST00000526313 TATDN1Q6P1N9 297 aa18.08■□□□□ 0.48
USH1C-204ENST00000526313 DTHD1Q6ZMT9 781 aa18.08■□□□□ 0.48
USH1C-204ENST00000526313 CLEC10AQ8IUN9 316 aa18.08■□□□□ 0.48
USH1C-204ENST00000526313 MTMR8Q96EF0 704 aa18.08■□□□□ 0.48
USH1C-204ENST00000526313 MTRQ99707 1265 aa18.08■□□□□ 0.48
USH1C-204ENST00000526313 VAT1LQ9HCJ6 419 aa18.08■□□□□ 0.48
USH1C-204ENST00000526313 ZNF219Q9P2Y4 722 aaPredicted RBP18.08■□□□□ 0.48
USH1C-204ENST00000526313 FRMPD2Q68DX3 1309 aaPredicted RBP18.08■□□□□ 0.48
USH1C-204ENST00000526313 DDTLA6NHG4 134 aaPredicted RBP18.07■□□□□ 0.48
USH1C-204ENST00000526313 AFMP43652 599 aa18.07■□□□□ 0.48
USH1C-204ENST00000526313 NONOQ15233 471 aaKnown RBP eCLIP18.07■□□□□ 0.48
USH1C-204ENST00000526313 GPATCH4Q5T3I0 446 aaKnown RBP18.07■□□□□ 0.48
USH1C-204ENST00000526313 SOGA3Q5TF21 947 aa18.07■□□□□ 0.48
USH1C-204ENST00000526313 JMJD4Q9H9V9 463 aa18.07■□□□□ 0.48
USH1C-204ENST00000526313 R3HCC1Q9Y3T6 440 aaKnown RBP18.07■□□□□ 0.48
USH1C-204ENST00000526313 PSME4Q14997 1843 aa18.07■□□□□ 0.48
USH1C-204ENST00000526313 YDJCA8MPS7 323 aa18.07■□□□□ 0.48
USH1C-204ENST00000526313 CBFA2T2O43439 604 aa18.07■□□□□ 0.48
USH1C-204ENST00000526313 DHX8Q14562 1220 aaKnown RBP18.07■□□□□ 0.48
USH1C-204ENST00000526313 CCSER1Q9C0I3 900 aa18.07■□□□□ 0.48
USH1C-204ENST00000526313 ATRNL1Q5VV63 1379 aa18.07■□□□□ 0.48
USH1C-204ENST00000526313 COL2A1P02458 1487 aaPredicted RBP18.06■□□□□ 0.48
USH1C-204ENST00000526313 MYH4Q9Y623 1939 aa18.06■□□□□ 0.48
USH1C-204ENST00000526313 PNMA6FA0A0J9YX94 578 aa18.06■□□□□ 0.48
USH1C-204ENST00000526313 GTPBP6O43824 516 aaPredicted RBP18.06■□□□□ 0.48
USH1C-204ENST00000526313 CACNB3P54284 484 aa18.06■□□□□ 0.48
USH1C-204ENST00000526313 EIF6P56537 245 aaKnown RBP18.06■□□□□ 0.48
USH1C-204ENST00000526313 CCZ1BP86790 482 aa18.06■□□□□ 0.48
USH1C-204ENST00000526313 CCZ1P86791 482 aaPredicted RBP18.06■□□□□ 0.48
USH1C-204ENST00000526313 PPP1R18Q6NYC8 613 aa18.06■□□□□ 0.48
USH1C-204ENST00000526313 FILIP1Q7Z7B0 1213 aa18.06■□□□□ 0.48
USH1C-204ENST00000526313 NYAP2Q9P242 653 aa18.06■□□□□ 0.48
USH1C-204ENST00000526313 ENTPD3O75355 529 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 UBASH3AP57075 661 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 CUL4BQ13620 913 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 NEK8Q86SG6 692 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 DPF2Q92785 391 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 TPM2P07951 284 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms