RNA–Protein interactions for RNA: ENST00000525257.1

USP47-205, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 4

Gene USP47, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-205ENST00000525257 C20orf194Q5TEA3 1177 aa28.67■■■□□ 2.18
USP47-205ENST00000525257 CDX2Q99626 313 aaPredicted RBP28.67■■■□□ 2.18
USP47-205ENST00000525257 NYAP2Q9P242 653 aa28.67■■■□□ 2.18
USP47-205ENST00000525257 RCAN3Q9UKA8 241 aa28.67■■■□□ 2.18
USP47-205ENST00000525257 ADAMTS4O75173 837 aa28.66■■■□□ 2.18
USP47-205ENST00000525257 NDUFB10O96000 172 aa28.66■■■□□ 2.18
USP47-205ENST00000525257 OSBP2Q969R2 916 aa28.66■■■□□ 2.18
USP47-205ENST00000525257 COL25A1Q9BXS0 654 aaPredicted RBP28.66■■■□□ 2.18
USP47-205ENST00000525257 SEMA6BQ9H3T3 888 aa28.66■■■□□ 2.18
USP47-205ENST00000525257 RIPK3Q9Y572 518 aa28.66■■■□□ 2.18
USP47-205ENST00000525257 MYH4Q9Y623 1939 aa28.66■■■□□ 2.18
USP47-205ENST00000525257 CDH23Q9H251 3354 aa28.65■■■□□ 2.18
USP47-205ENST00000525257 SMAD3P84022 425 aaKnown RBP28.65■■■□□ 2.18
USP47-205ENST00000525257 KBTBD3Q8NAB2 608 aa28.65■■■□□ 2.18
USP47-205ENST00000525257 DDX11Q96FC9 970 aa28.65■■■□□ 2.18
USP47-205ENST00000525257 SYNRGQ9UMZ2 1314 aa28.65■■■□□ 2.18
USP47-205ENST00000525257 TSHZ3Q63HK5 1081 aa28.64■■■□□ 2.18
USP47-205ENST00000525257 GIMAP6Q6P9H5 292 aa28.64■■■□□ 2.18
USP47-205ENST00000525257 CPXCR1Q8N123 301 aa28.64■■■□□ 2.18
USP47-205ENST00000525257 PRPF38AQ8NAV1 312 aaKnown RBP28.64■■■□□ 2.18
USP47-205ENST00000525257 APPBP2Q92624 585 aa28.64■■■□□ 2.18
USP47-205ENST00000525257 EPB41L4AQ9HCS5 686 aaPredicted RBP28.64■■■□□ 2.18
USP47-205ENST00000525257 CLIP2Q9UDT6 1046 aa28.64■■■□□ 2.18
USP47-205ENST00000525257 ZHX1Q9UKY1 873 aaPredicted RBP28.64■■■□□ 2.18
USP47-205ENST00000525257 KIAA0355O15063 1070 aa28.63■■■□□ 2.17
USP47-205ENST00000525257 RAG1P15918 1043 aa28.63■■■□□ 2.17
USP47-205ENST00000525257 EPHB4P54760 987 aa28.63■■■□□ 2.17
USP47-205ENST00000525257 MSL3Q8N5Y2 521 aaKnown RBP28.63■■■□□ 2.17
USP47-205ENST00000525257 RNPC3Q96LT9 517 aaKnown RBP28.63■■■□□ 2.17
USP47-205ENST00000525257 TTYH1Q9H313 450 aaPredicted RBP28.63■■■□□ 2.17
USP47-205ENST00000525257 FAM184BQ9ULE4 1060 aa28.63■■■□□ 2.17
USP47-205ENST00000525257 CTDP1Q9Y5B0 961 aaPredicted RBP28.63■■■□□ 2.17
USP47-205ENST00000525257 SYNGAP1Q96PV0 1343 aa28.63■■■□□ 2.17
USP47-205ENST00000525257 PRDM1O75626 825 aa28.62■■■□□ 2.17
USP47-205ENST00000525257 SNAI1O95863 264 aaPredicted RBP28.62■■■□□ 2.17
USP47-205ENST00000525257 TDO2P48775 406 aa28.62■■■□□ 2.17
USP47-205ENST00000525257 ACLYP53396 1101 aa28.62■■■□□ 2.17
USP47-205ENST00000525257 KIFC2Q96AC6 838 aa28.62■■■□□ 2.17
USP47-205ENST00000525257 TSEN34Q9BSV6 310 aaKnown RBP28.62■■■□□ 2.17
USP47-205ENST00000525257 STARD7Q9NQZ5 370 aa28.62■■■□□ 2.17
USP47-205ENST00000525257 TMEM39AQ9NV64 488 aa28.62■■■□□ 2.17
USP47-205ENST00000525257 DNAJC25-GNG10A0A024R161 153 aa28.61■■■□□ 2.17
USP47-205ENST00000525257 IGKV6D-41A0A0C4DH26 115 aa28.61■■■□□ 2.17
USP47-205ENST00000525257 RNF113AO15541 343 aaKnown RBP28.61■■■□□ 2.17
USP47-205ENST00000525257 GPAA1O43292 621 aa28.61■■■□□ 2.17
USP47-205ENST00000525257 ZBED4O75132 1171 aa28.61■■■□□ 2.17
USP47-205ENST00000525257 MYLIPQ8WY64 445 aa28.61■■■□□ 2.17
USP47-205ENST00000525257 GPATCH3Q96I76 525 aa28.61■■■□□ 2.17
USP47-205ENST00000525257 RAVER2Q9HCJ3 691 aaKnown RBP28.61■■■□□ 2.17
USP47-205ENST00000525257 M0R2C6 588 aa28.6■■■□□ 2.17
USP47-205ENST00000525257 FPGSQ05932 587 aa28.6■■■□□ 2.17
USP47-205ENST00000525257 MAMDC4Q6UXC1 1216 aa28.6■■■□□ 2.17
USP47-205ENST00000525257 MAFAQ8NHW3 353 aaPredicted RBP28.6■■■□□ 2.17
USP47-205ENST00000525257 VCANP13611 3396 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 MYADML2A6NDP7 307 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 ATP2A1O14983 1001 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 APPP05067 770 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 FAAP100Q0VG06 881 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 KCNA10Q16322 511 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 ZNF444Q8N0Y2 327 aaPredicted RBP28.59■■■□□ 2.17
USP47-205ENST00000525257 LRRC47Q8N1G4 583 aaKnown RBP28.59■■■□□ 2.17
USP47-205ENST00000525257 KLHDC9Q8NEP7 349 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 NUP133Q8WUM0 1156 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 CEP95Q96GE4 821 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 MCM3APO60318 1980 aa28.59■■■□□ 2.17
USP47-205ENST00000525257 MOXD2PA6NHM9 499 aa28.58■■■□□ 2.17
USP47-205ENST00000525257 DCDC2CA8MYV0 355 aa28.58■■■□□ 2.17
USP47-205ENST00000525257 IRX5P78411 483 aaPredicted RBP28.58■■■□□ 2.17
USP47-205ENST00000525257 ANKRD33Q7Z3H0 272 aa28.58■■■□□ 2.17
USP47-205ENST00000525257 ANKRD35Q8N283 1001 aa28.58■■■□□ 2.17
USP47-205ENST00000525257 SLC38A10Q9HBR0 1119 aa28.58■■■□□ 2.17
USP47-205ENST00000525257 PRUNE2Q8WUY3 3088 aa28.58■■■□□ 2.17
USP47-205ENST00000525257 DUSP11O75319 330 aaKnown RBP28.57■■■□□ 2.16
USP47-205ENST00000525257 ZFYP08048 801 aaPredicted RBP28.57■■■□□ 2.16
USP47-205ENST00000525257 GNAT2P19087 354 aa28.57■■■□□ 2.16
USP47-205ENST00000525257 ACVR2BQ13705 512 aa28.57■■■□□ 2.16
USP47-205ENST00000525257 ZNF467Q7Z7K2 595 aaPredicted RBP28.57■■■□□ 2.16
USP47-205ENST00000525257 TOX2Q96NM4 488 aa28.57■■■□□ 2.16
USP47-205ENST00000525257 ZNF287Q9HBT7 754 aa28.57■■■□□ 2.16
USP47-205ENST00000525257 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.57■■■□□ 2.16
USP47-205ENST00000525257 MTMR4Q9NYA4 1195 aa28.57■■■□□ 2.16
USP47-205ENST00000525257 FEM1BQ9UK73 627 aa28.57■■■□□ 2.16
USP47-205ENST00000525257 ADCY6O43306 1168 aa28.56■■■□□ 2.16
USP47-205ENST00000525257 CCSAPQ6IQ19 270 aaPredicted RBP28.56■■■□□ 2.16
USP47-205ENST00000525257 MKL1Q969V6 931 aa28.56■■■□□ 2.16
USP47-205ENST00000525257 FGD4Q96M96 766 aa28.56■■■□□ 2.16
USP47-205ENST00000525257 TTLL1O95922 423 aa28.55■■■□□ 2.16
USP47-205ENST00000525257 C6orf222P0C671 652 aaPredicted RBP28.55■■■□□ 2.16
USP47-205ENST00000525257 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.55■■■□□ 2.16
USP47-205ENST00000525257 DCTPP1Q9H773 170 aa28.55■■■□□ 2.16
USP47-205ENST00000525257 HOMER2Q9NSB8 354 aa28.55■■■□□ 2.16
USP47-205ENST00000525257 ISY1Q9ULR0 285 aaKnown RBP28.55■■■□□ 2.16
USP47-205ENST00000525257 FOSL2P15408 326 aa28.54■■■□□ 2.16
USP47-205ENST00000525257 CCDC144BQ3MJ40 725 aa28.54■■■□□ 2.16
USP47-205ENST00000525257 IFNL3Q8IZI9 196 aa28.54■■■□□ 2.16
USP47-205ENST00000525257 GMCL1P1Q8NEA9 526 aa28.54■■■□□ 2.16
USP47-205ENST00000525257 CHST13Q8NET6 341 aa28.54■■■□□ 2.16
USP47-205ENST00000525257 GLT1D1Q96MS3 346 aa28.54■■■□□ 2.16
USP47-205ENST00000525257 ABHD16BQ9H3Z7 469 aa28.54■■■□□ 2.16
USP47-205ENST00000525257 FBXO40Q9UH90 709 aa28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms